Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01281 ATGGATCCACCATTCTCAGCTAAGGACACTTCTGCAGCCGACTTGCAAAATATTTATTCAGCAAGTGAACTGGTCTCCAAGGCACCAAGCCTGCTTCTGCCTTCTCAGGAACTTAGAAGACATTGTAACAAAGTGGTGAAGTACATGGATTGCCTTAAGAATCATGCAGCAGCAATTGGTGGCAATGCAACTGATGGCTGTGGTGAATTCATGCCTAGTGGAGAGGATGGCACTTTTGAAGCTCTCAAGTGCTCAGCTTGCAGTTGCCACAGAAACTTTCACAGGAAAGAGATAGAATCTGATTTCCCCTCTTGTTGCTTCTACTCCTTAGCTCTTCCAAACGGCACTGCTCAGACAAAAACAATTACAGAACATCATTGTATTTCACACCAGCTGGCAGTTCAGGGTTCATCTTATCAGACATCATCACCAAATAAATGTGGTTCGATTCCTTCGGAATCCGATGAGAAGGATGTAGATGATGATAGAGAGGCTAGAGGACATGTTGATTCAGTTGTGAAGGTGAGGAAGAGGTTCAGGACCAAGTTCACTCAAGAGCAGAAGGAAAAGATGCTGAGCTTTGCAGAAAAGGCTGGGTGGAAAATACAGAAGTTGGATGAGGAAATAATACAAGAGTTTTGCCAAAAGACTGGAATAAAGAGAAGAGTTCTCAAGGTGTGGATGCATAACAACAAACACACATTTTCCAAGGGAAACACTATTGCAGACTAG 732 0.4331 MDPPFSAKDTSAADLQNIYSASELVSKAPSLLLPSQELRRHCNKVVKYMDCLKNHAAAIGGNATDGCGEFMPSGEDGTFEALKCSACSCHRNFHRKEIESDFPSCCFYSLALPNGTAQTKTITEHHCISHQLAVQGSSYQTSSPNKCGSIPSESDEKDVDDDREARGHVDSVVKVRKRFRTKFTQEQKEKMLSFAEKAGWKIQKLDEEIIQEFCQKTGIKRRVLKVWMHNNKHTFSKGNTIAD* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01281 243 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 235 - -
Pte5g01281 243 NCBIfam homeobox domain, ZF-HD class 176 232 IPR006455 -
Pte5g01281 243 Pfam ZF-HD protein dimerisation region 46 98 IPR006456 -
Pte5g01281 243 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 47 98 IPR006456 -
Pte5g01281 243 FunFam Zinc-finger homeodomain protein 2 163 237 - -
Pte5g01281 243 MobiDBLite consensus disorder prediction 151 165 - -
Pte5g01281 243 MobiDBLite consensus disorder prediction 138 165 - -
Pte5g01281 243 SUPERFAMILY Homeodomain-like 169 237 IPR009057 -
Pte5g01281 243 Gene3D - 162 238 - -
Pte5g01281 243 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 48 97 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01281 Pte-Chr5 34869205 34869999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01281 45 241 ZF-HD Transcription Factor Family AT1G14440 51.232 2.82e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pte5g01281 ZF-HD_dimer 3.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01281 - - qsa:O6P43_005459 248.054