Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01272 ATGGGTGACCTGTACGAGCTTTCCAATATGATCATAATGTCACTTGCAGACTTCCACGTAGATGTGGTGCATGATCTTGATGAGGCTATTGCTATGGTAGATGAATCATGTCGAAGAGGCAATGCTTCGCAGTCTTTTGTTTCAAGATTACCTGCTGTTGTGACGGCAAGTGTTGATGCAAATGATGTGTGTGCTGTCTGTATGGACAGCTTCAGTCTCCAGGTTAGTGATTTGGAAGAGTACTGTGTCAAACAAGTACCTTGTGGTCATATGTATCATGCCAACTGCATAACGACATGGCTCTCTCGCTGCAACTCTTGCCCTCTTTGCCGCTGCAAAATCTTGAAGGATCAATAG 357 0.4454 MGDLYELSNMIIMSLADFHVDVVHDLDEAIAMVDESCRRGNASQSFVSRLPAVVTASVDANDVCAVCMDSFSLQVSDLEEYCVKQVPCGHMYHANCITTWLSRCNSCPLCRCKILKDQ* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01272 118 ProSiteProfiles Zinc finger RING-type profile. 64 111 IPR001841 -
Pte5g01272 118 SMART ring_2 64 110 IPR001841 -
Pte5g01272 118 SUPERFAMILY RING/U-box 57 116 - -
Pte5g01272 118 Pfam Ring finger domain 63 111 IPR001841 -
Pte5g01272 118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 116 IPR013083 -
Pte5g01272 118 PANTHER SI:CH211-59O9.10 15 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01272 Pte-Chr5 34776587 34777085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01272 34 117 C3H Transcription Factor Family AT3G02340 40.449 1.93e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01272 - K22378 qsa:O6P43_003971 112.849