Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01254 ATGGCACCAGTTGGATTACCTCCTGGTTTTAGGTTCCATCCTACTGACGAAGAGCTAGTGAATTACTACCTTAAGAGGAAGATTCATGGCCAACAGATTGAGCTTGACATCATTCCTGAAGTCGATCTCTACAAATGTGAACCATGGGAGTTAGCAGAAAAATCATTTTTGCCAAGTAGAGACCCAGAGTGGTACTTCTTTGGACCAAGGGATAGGAAGTACCCTAATGGCTTCAGAACAAACAGAGCAACCAGAGCAGGGTATTGGAAATCCACGGGTAAAGACAGAAAGGTCACAAGCCAGAACAGACCCATTGGAATGAAGAAGACTTTGGTTTATTATAGAGGTCGTGCTCCTCAGGGCATCAGAACAGATTGGGTTATGCATGAGTACCGACTTGATGATCAAGAATGTGAAGATACCTCAGGGATTCAGGATACGTATGCATTGTGTCGCGTGTTCAAAAAAAATGGGATTTGCTCTGAGATTGAAGAACAGGGGCAATGCAGTTTGTCACTAATTGAGTTCTCACAGCAAAGTATCATTAACGAGTGTGAAACAATGTCCCCAGACATTCCAATAGCGTCACCCTCATGCTTAGAAGAGGAAGACAAGGATGACTCGTGGATGCAGTTTATCACAGATGATGCATGGTATCATCCCAATGCAAATATTGGTGGTGGAGAAGAAATATCGCATATCACATTCACAAACTAA 717 0.4296 MAPVGLPPGFRFHPTDEELVNYYLKRKIHGQQIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRKVTSQNRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDQECEDTSGIQDTYALCRVFKKNGICSEIEEQGQCSLSLIEFSQQSIINECETMSPDIPIASPSCLEEEDKDDSWMQFITDDAWYHPNANIGGGEEISHITFTN* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01254 238 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Pte5g01254 238 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Pte5g01254 238 FunFam Nac domain-containing protein 86 15 159 - -
Pte5g01254 238 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 180 - -
Pte5g01254 238 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Pte5g01254 238 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01254 Pte-Chr5 34623154 34626062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01254 1 231 NAC Transcription Factor Family AT3G17730 73.171 1.07e-130 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte5g01254 NAM 3.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01254 - - gmx:100784495 457.603