Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01253 ATGGTGAGGAAAAGAAGAACTGATGTTCCTGGAGGAAGTGAAAGCCCTGACAGTCAGGATGGTGGAAGTGTTGGTCGGGGTTCCCAAGCTTATGCTGAAAGGACCGGACCTCCAACGCAGCATGGAACAGGAGGAGGGGGATATCAGGGTGGTAGAGGTTCTGGTGCGCAAGGAGGTCGCGGTGGAGGATATGGTGGGGGACGTGGCCGTGGAATGCACCAACAGCATTATGGAGGTCCGTCAGAGTATCAAGGCAGGAGCCAGCGAGGACCTTCTGAGTATCAAGGCAGGAGCCAGCAGTACGGAGGCCCTTCTGAGTATCAAGGCAGGAGCCAGCAGTACGGAGGTCCTTCTGAGTATCAAGGCAGGAGCCAGCACTATGGAGGTCCTTCTGAGTATCAAGGTAGGAGTCAGCAGTCTGGGGGTGCTTCTGAGTATCAAGGCAGGAGTCAGCAGTCCGGAGGTCCTCTCGAGTATCAAGGTAGGAGCCAGCAGCATGGAGGTTCATCTGATTATCAAGGTAGGGGTAGAGGATCAGGATCTCAGCAGGGTAGTCGAGGAGGTTCTGATGGCCGTGGTGGGAGTATGGATGGTCGCCGTGGTGGTGGGCCTTCTGGTGGCCTACCCCGACCTCAAGTTCCCGAGCTGCACCAAGCAACCTCAGTTCGTTCTGAAGCTGGGGCGAGTCCTCAGCCTGCACCTTCTGAGGCAAGTTCTTCAAAAATGCAGGAGCAACCGCAGATAGAGCAGGAGTTTCAGAATCTTGCTGTTCAGCAGCAAGAAACTGCTGGTCATATTACTCCAATTCCACCTTCGAGTAAATCTATGAGGTTTCCTCTAAGACCTGGAAAGGGTAGCACTGGTACCAAATGTGTGGTTAAGGCAAACCACTTCTGTGCAGAATTGCCCAACAAAGATCTGCACCAGTATGATGTGACCATCACACCTGAGGTAGCATCACGTGGTGTGAATCGTGCAGTAATGGAACAACTGGTCAAGTTGTACAGGGAATCTCATCTTGCAAAGCGGTTACCTGCCTATGATGGGCGGAAGAGCCTGTATACTGCAGGACCTCTTCCTTTTCAATCTAAGGAGTTTAGAATCAATCTTATTGATGAGGATGACGGTTCAGGAAATCAAAGAAGGGAGAGGGAGTTCCGAGTTGTCATAAAGTTTGCTGCTAGAGCTGACCTGCATCACCTGGAGCTCTTTTTGCAAGGGAGGCAAGCTGATGCTCCCCAGGAAGCACTGCAGGTTCTTGACATTGTTCTGCGTGAGCTGCCAACTACTAGGTATTGCCCTGTGGGTCGTTCATTTTATTCCCCTGATCTTGGGAGAAGACAGCCACTAGGTGAGGGATTAGAAAGTTGGCGGGGTTTCTATCAAAGTATTCGTCCAACTCAGATGGGTTTATCTCTAAATATAGATATGTCCTCCACTGCTTTTATCGAGCCTCTTCCTGTTATAGATTTTGTTACCCAGCTACTGAATAGGGAGGTTTCCTCCAGGCCATTATCAGATGCTGACCGTGTAAAGATTAAGAAAGCTTTGCGTGGGATCAAGGTTGAAGTCACGCACAGAGGAAATATGCGGAGGAAGTACCGAATATCTGGCCTGACTTCACAGGCAACCCGAGAACTGACATTTCCAGTTGATGAAAGGGGCACCTTGAAATCAGTTGTGGAGTACTTCTATGAAACATATGGTTTTGTCATCCAACATACTCAATGGCCTTGCCTTCAAGTGGGAAATCAGCAAAGACCTAATTACTTACCCATGGAGGTTTGCAAGATAGTTGAAGGTCAAAGGTACACTAAGAGGTTGAATGAGAGGCAAATTACTGCCTTGCTGAAGGTGACCTGCCAACGTCCACATGAAAGAGAACGTGATATTATGCAGACAGTTCATCACAATGCTTACCGTGATGATCCTTATGCAAAAGAATTTGGTATCGTAATCAGTGAGAAGCTTGCTCAAGTTGAAGCACGCATTCTTCCTCCGCCATGGCTTAAATATCATGAATCAGGTAGAGAAAGAGATTGCCTGCCACAAGTTGGCCAATGGAATATGATGAATAAGAAAATGGTAAATGGGGGAACTGTCAACAACTGGATCTGCATTAACTTCTCTCGCAATGTTCAAGATAGTGTAGCCCGTGGATTTTGTCATGAGCTTGCTCAAATGTGTTATACTTCTGGAATGGGATTCAATCCTGAGCCAGTTCTACCTCCAGTCAGTGGACGTCCTGATCAGGTGGAGAAGATACTAAAATCACGTTACCATGATGCCACAACTAAGCTCCGTGGAAAGGAGCTTGATTTGCTAATTGTTATTTTGCCAGATAATAATGGGTCTCTGTATGGTGATGTGAAACGAATTTGTGAGACAGACCTTGGGATTGTGTCCCAGTGCTGCTTAACAAAGCATGTGTTCCGAATGAGCAAGCAATATCTTGCAAATGTTTCTTTAAAAATCAATGTGAAGGTTGGTGGGAGGAACACTGTGCTTGTTGATGCACTCTCACGGAGAATACCTTTAGTTAGTGATCGACCTACTATTATTTTTGGAGCTGATGTTACTCATCCACATCCTGGAGAGGACTCGAGCCCTTCCATTGCAGCTGTTGTGGCTTCTCAAGATTGGCCTGAAATTACAAAGTACGCCGGTTTGGTCTGTGCTCAATCACACCGTCAGGAGCTGATTCAAGATTTGTTCAAGCAATGGCAAGATCCTGTTAGAGGAACAGTGACTGGCGGCATGGTCAAGGAACTTCTTATTTCATTTCGAAGGGCGACTGGACAGAAGCCACAGCGCATCATTTTCTACAGGCATCCTATTTCTTATTCTTTGGATGGAGTCAGTGAAGGGCAATTCTACCAGGTTTTGCTGTTTGAGCTCGACGCTATCCGCAGGGCCTGTGCATCTCTTGAGCCTAACTATCAGCCTCCAGTGACATTTGTTGTGGTCCAAAAGCGTCACCACACGAGGTTGTTTGCTAGTAATCATCACGACAGAAATTCTGTTGATCGTAGTGGAAACATTTTACCAGGCACTGTGGTAGACTCCAAAATTTGTCACCCAACAGAGTTTGACTTCTACCTATGTAGCCATGCTGGAATTCAGGGAACTAGTCGCCCTGCTCATTACCATGTTCTTTGGGATGAAAACAACTTCACGGCCGATCAACTGCAAACCCTGACTAATAATTTATGCTATACTTATGCAAGATGCACTAGATCTGTTTCCATTGGTAAGATCTATCTCCTTCCCTCCCCTCATGTCCCTTCTTAA 3291 0.4719 MVRKRRTDVPGGSESPDSQDGGSVGRGSQAYAERTGPPTQHGTGGGGYQGGRGSGAQGGRGGGYGGGRGRGMHQQHYGGPSEYQGRSQRGPSEYQGRSQQYGGPSEYQGRSQQYGGPSEYQGRSQHYGGPSEYQGRSQQSGGASEYQGRSQQSGGPLEYQGRSQQHGGSSDYQGRGRGSGSQQGSRGGSDGRGGSMDGRRGGGPSGGLPRPQVPELHQATSVRSEAGASPQPAPSEASSSKMQEQPQIEQEFQNLAVQQQETAGHITPIPPSSKSMRFPLRPGKGSTGTKCVVKANHFCAELPNKDLHQYDVTITPEVASRGVNRAVMEQLVKLYRESHLAKRLPAYDGRKSLYTAGPLPFQSKEFRINLIDEDDGSGNQRREREFRVVIKFAARADLHHLELFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNREVSSRPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYTKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYRDDPYAKEFGIVISEKLAQVEARILPPPWLKYHESGRERDCLPQVGQWNMMNKKMVNGGTVNNWICINFSRNVQDSVARGFCHELAQMCYTSGMGFNPEPVLPPVSGRPDQVEKILKSRYHDATTKLRGKELDLLIVILPDNNGSLYGDVKRICETDLGIVSQCCLTKHVFRMSKQYLANVSLKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQSHRQELIQDLFKQWQDPVRGTVTGGMVKELLISFRRATGQKPQRIIFYRHPISYSLDGVSEGQFYQVLLFELDAIRRACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDRNSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADQLQTLTNNLCYTYARCTRSVSIGKIYLLPSPHVPS* 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01253 1096 MobiDBLite consensus disorder prediction 80 189 - -
Pte5g01253 1096 Pfam Argonaute linker 1 domain 434 484 IPR014811 -
Pte5g01253 1096 Gene3D - 844 1091 IPR036397 GO:0003676
Pte5g01253 1096 CDD Piwi_ago-like 644 1083 IPR045246 -
Pte5g01253 1096 Gene3D paz domain 479 604 - -
Pte5g01253 1096 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 261 1083 - -
Pte5g01253 1096 Pfam Mid domain of argonaute 683 758 IPR032473 -
Pte5g01253 1096 Pfam Piwi domain 775 1083 IPR003165 GO:0003676
Pte5g01253 1096 SUPERFAMILY Ribonuclease H-like 760 1083 IPR012337 -
Pte5g01253 1096 ProSiteProfiles Piwi domain profile. 774 1096 IPR003165 GO:0003676
Pte5g01253 1096 Pfam N-terminal domain of argonaute 289 424 IPR032474 -
Pte5g01253 1096 SMART DUF1785_2 433 485 IPR014811 -
Pte5g01253 1096 MobiDBLite consensus disorder prediction 217 269 - -
Pte5g01253 1096 Gene3D - 664 837 - -
Pte5g01253 1096 Pfam PAZ domain 490 615 IPR003100 GO:0005515
Pte5g01253 1096 SMART Piwi_a_2 774 1089 IPR003165 GO:0003676
Pte5g01253 1096 MobiDBLite consensus disorder prediction 1 278 - -
Pte5g01253 1096 FunFam Protein argonaute-2 479 605 - -
Pte5g01253 1096 ProSiteProfiles PAZ domain profile. 486 600 IPR003100 GO:0005515
Pte5g01253 1096 SMART PAZ_2_a_3 490 622 IPR003100 GO:0005515
Pte5g01253 1096 FunFam protein argonaute 10-like 843 1088 - -
Pte5g01253 1096 Pfam Argonaute linker 2 domain 626 672 IPR032472 -
Pte5g01253 1096 Pfam Glycine-rich region of argonaut 167 270 IPR024357 -
Pte5g01253 1096 SUPERFAMILY PAZ domain 293 637 IPR036085 GO:0005515
Pte5g01253 1096 CDD PAZ_argonaute_like 485 599 - -
Pte5g01253 1096 FunFam Argonaute 10 664 837 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01253 Pte-Chr5 34597860 34605453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01253 171 1083 Eukaryotic Initiation Factors Gene Family AT1G48410 80.022 0.0 1501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01253 K11593 - qsu:111993289 1620.52