Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01244 ATGTCTTCTGCCGGTGGAAACTCCGGCGGCGGCGGATCCACCGCCATAGCAGCCATACCTGAAATGTACTTTTGTTACCAGTGTGATCGCACCGTCTCGATTACACCCTCACCTACCTCATTAGATCTCACCTGCCCTAATTGCAATGGTGGGTTCATCGAAGAAGTTGAAAACCCTGCTCTTACTCTCAACCCCAACGCTGACTCCACCCCTTTCTTATCGTTTAGTACTAACCCTGGTATGGATCCTCCGCCATTTGTTTTCTCCACCTCCTCTCCTCCGGGCGCCGGTGGAGATGGGGGATTCGATGATCTCTCTGCTCTTCTTGGCGGTCTTGGCCCGAATAGATTGTCTCCGCTTCAAGATCCGGACGTGTTCAACCCTTTTCTTTTCCTACAGAACTATTTGCAAAACCTAAGAGCGGGTGGTGGCCATGTTCAATTCGTAATTGATGCGGGTGACCCAGCTGGTACTCATCGCCTTCCAGCAAATCTTAGTTTAGGGGATTATTTCATTGGACCGGGACTTGAGCAGTTGATTCAGCAGCTGGCAGAGAATGATCCAAACCGTTACGGTGCACCACCGGCTTCAAAGTCAGTTGTGGAAAGATTGCCTAAGATAAAATTTTCAAAGGAAATGTTGGCTTCAGATTATTCACAGTGTGCTGTTTGCAAAGACTCGTTTGAGCTCGAGGAAGAAGCAAAGCAATTACCTTGTAAGCATATTTACCATTCGGATTGTATCGTGCCTTGGTTGCAACAGCACAATTCATGTCCTGTTTGTCGTTATGAGTTGCCAACCGATGACCCTGATTACGAACGGATGCGAGGGAATCCTGTTGATACGAATAGGTATCAGTCTACTGGAGCGTCTTCTGAAGGTGGAAATGGGGCAGGTTCAGGTGAGAATTCGCTCACACCTAGGACAGTTGAACGTAGGTTTAGGGTTCAATTGCCGTGGCCTTTCAGGGTTTTTGGCTCACCTGCTGAGACAAGCAATAGTGAAACCGGTAACAACATTGGAAACAATGGTAGCGGGGAACGTAACACAGAGAATAGAGGGAATCAAAACTTGCAGTCAGATCCAAGACAAGAGGATCTTGATTAA 1107 0.4779 MSSAGGNSGGGGSTAIAAIPEMYFCYQCDRTVSITPSPTSLDLTCPNCNGGFIEEVENPALTLNPNADSTPFLSFSTNPGMDPPPFVFSTSSPPGAGGDGGFDDLSALLGGLGPNRLSPLQDPDVFNPFLFLQNYLQNLRAGGGHVQFVIDAGDPAGTHRLPANLSLGDYFIGPGLEQLIQQLAENDPNRYGAPPASKSVVERLPKIKFSKEMLASDYSQCAVCKDSFELEEEAKQLPCKHIYHSDCIVPWLQQHNSCPVCRYELPTDDPDYERMRGNPVDTNRYQSTGASSEGGNGAGSGENSLTPRTVERRFRVQLPWPFRVFGSPAETSNSETGNNIGNNGSGERNTENRGNQNLQSDPRQEDLD* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01244 368 SMART ring_2 221 261 IPR001841 -
Pte5g01244 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 268 IPR013083 -
Pte5g01244 368 FunFam E3 ubiquitin-protein ligase RING1-like 182 268 - -
Pte5g01244 368 SUPERFAMILY RING/U-box 200 268 - -
Pte5g01244 368 CDD RING-H2_RNF126-like 220 262 - -
Pte5g01244 368 MobiDBLite consensus disorder prediction 327 362 - -
Pte5g01244 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 124 266 - -
Pte5g01244 368 Pfam Ring finger domain 220 262 IPR001841 -
Pte5g01244 368 ProSiteProfiles Zinc finger RING-type profile. 221 262 IPR001841 -
Pte5g01244 368 MobiDBLite consensus disorder prediction 325 368 - -
Pte5g01244 368 Pfam zinc-ribbon 22 55 IPR039525 GO:0061630
Pte5g01244 368 MobiDBLite consensus disorder prediction 266 309 - -
Pte5g01244 368 MobiDBLite consensus disorder prediction 280 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01244 Pte-Chr5 34457874 34461710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01244 162 280 C3H Transcription Factor Family AT5G01980 50.420 1.61e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01244 K11982 - qsa:O6P43_005293 454.907