Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01238 ATGGAAGAGTGCTGGGAGAACTGGTTGTCTGAATTGGAATCTGACGACTGTGGTTTCTATGAACAATGTGAGATGACCCCCATGGATGATGAGTGGCTGCAGTCACAGGATCAAGACGAGCTCAAGCTGAGAGACAGCAACTCCTCAAACTCCATGACCATATGTCGCCAGAGCAGTGGCAACATTACCAGTTCACTATCGATTGATGAATCTTCCTGCTTAGAACCTACCAAAGTTCACATTACTAGCTCAAACCCTGAGAGTAATGATAATGTTTTTGGTACATCAAAGCCAGCTGCTTCTTCGCCTTCCTCCTATGTACTTTGTTTTGACAGTTGTGGGTCACCACCCACCATTCCATTCGTGACTGGCACTCTTCCTGCAAATCTAAGCTCTTCAAATTTGTGCCCAAAGAGCCAAAACTCTGAACCAAGAAGCAGACCATACACCAAACGACCACATTCTCCGGTGAAAAGATCCAGTCGACGCTCTGCAGACCACATCATGACCGAGAGATTGAGAAGAGAAAGGATAACTTGCAAGTTCATTGAACTTTCAGCACTCATTCCTGGTCTCAAGAAGACCGACAAGAGTTCAGTCCTCTCGGATACTATCAAGTACCTGAAACAACTCAAAGAACGTATACAAATCTTGGAAGAGCAGGAGAAGAAAAGAACAGTAGATACAGTTGTGGTGATGACTGCCAAATCTCAGCAGTCTGCTGAGGAAGTATCGGATACGTTTTCCAATTCTGGTGAGGAAATCTCAGATCATTCATCAGATCATGACGCCTCTAATGATACATCCCTTGAGGTTGAGGCAAGAGTTTCAGGTAGGGATGTACTCATTCGGATTCGCTGCAGAAGAGAAAGAGGAATGCTCAACCACATTTTTACAGAAATAGAAAAGCTTCACTTGTCAGTTATCAATAGTAGTGCCTTTCCCTTTGGAAGCTCCTCTCTTGAAGCCTGCATAATTGCTCAGGTGGACAATGAATTGAGCATGAAAGCGAAGGATTTAGCTAAAAATATTAGGCATGCCCTACTTTCGTTTGTTTAA 1059 0.4381 MEECWENWLSELESDDCGFYEQCEMTPMDDEWLQSQDQDELKLRDSNSSNSMTICRQSSGNITSSLSIDESSCLEPTKVHITSSNPESNDNVFGTSKPAASSPSSYVLCFDSCGSPPTIPFVTGTLPANLSSSNLCPKSQNSEPRSRPYTKRPHSPVKRSSRRSADHIMTERLRRERITCKFIELSALIPGLKKTDKSSVLSDTIKYLKQLKERIQILEEQEKKRTVDTVVVMTAKSQQSAEEVSDTFSNSGEEISDHSSDHDASNDTSLEVEARVSGRDVLIRIRCRRERGMLNHIFTEIEKLHLSVINSSAFPFGSSSLEACIIAQVDNELSMKAKDLAKNIRHALLSFV* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01238 352 Coils Coil 201 228 - -
Pte5g01238 352 MobiDBLite consensus disorder prediction 132 168 - -
Pte5g01238 352 MobiDBLite consensus disorder prediction 241 270 - -
Pte5g01238 352 SMART finulus 168 217 IPR011598 GO:0046983
Pte5g01238 352 Pfam Helix-loop-helix DNA-binding domain 165 212 IPR011598 GO:0046983
Pte5g01238 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Pte5g01238 352 MobiDBLite consensus disorder prediction 255 270 - -
Pte5g01238 352 Gene3D - 158 231 IPR036638 GO:0046983
Pte5g01238 352 PANTHER BHLH TRANSCRIPTION FACTOR 25 349 - -
Pte5g01238 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 221 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01238 Pte-Chr5 34277114 34279475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01238 104 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.976 1.02e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte5g01238 HLH 2.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01238 - - zju:107424976 213.386