Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01237 ATGGCAGTCAGTTCTGTACGGATAGTGCCCGCACCTCCGCTGTTGGTAAACACAAATAGTGCAACAATTCAAGGTAGGAGGCAAAGGCAATTAAAACTGGGTTGGGACTCGAAAAATGGGGGGTCGTTCTGCCTTTCATCTCTTAGAAACGGAAGCTGTTTTCTGTTGTCTTGTCTTCCTCCTCCTACTTCATCATCATTTTCATCATCCTTACTACCCCAGACTGCATCTGCTGCTGCGACTTCAACCAAGCTATATGTCAGTGGACTATCTTTCCGGACTACGGAAGAGAGTCTTCGAAATGCATTCGAAAATTTTGGACAACTTGTAGAAGTAAATATTGTGATGGATAAAGTAGCAAAAAGACCAAGAGGATTTGCTTTTCTTCGTTATTCAACTGTGGAAGAATCTCAGAAAGCCATTGAAGGAATGCATGGAAAGTTTCTGGATGGCAGAGTAATTTTTGTCGAAGTTGCAAAATCTAAGTCAGAACTGCGCCAAGTTTCTAAGCGTAATCCAGGACAATCTTGA 531 0.4237 MAVSSVRIVPAPPLLVNTNSATIQGRRQRQLKLGWDSKNGGSFCLSSLRNGSCFLLSCLPPPTSSSFSSSLLPQTASAAATSTKLYVSGLSFRTTEESLRNAFENFGQLVEVNIVMDKVAKRPRGFAFLRYSTVEESQKAIEGMHGKFLDGRVIFVEVAKSKSELRQVSKRNPGQS* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01237 176 SMART rrm2_1 84 157 IPR003954 GO:0003676
Pte5g01237 176 Gene3D - 68 176 IPR012677 -
Pte5g01237 176 SMART rrm1_1 84 157 IPR000504 GO:0003723
Pte5g01237 176 SUPERFAMILY RNA-binding domain, RBD 79 174 IPR035979 GO:0003676
Pte5g01237 176 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 161 IPR000504 GO:0003723
Pte5g01237 176 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 154 IPR000504 GO:0003723
Pte5g01237 176 PANTHER NUCLEOLAR PROTEIN 8 57 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01237 Pte-Chr5 34222920 34226559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01237 62 172 Eukaryotic Initiation Factors Gene Family AT4G34110 26.087 1.84e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01237 - K13195 qsa:O6P43_008424 177.948