Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01236 ATGCGCCTTGACTCTGGTGTTTGTGCAATGGGTGTTCAGGATGAAAGTGATATCACAATGTCAAAGACAATTTCCATAGCTGGAAACAACCAAGTCAAGGGTGATACGCAATCTGAAACTTTAGTCCTGTCCAAGTATACAAGTTCTTCTCTCAAGGTGAGGAAACCTTACACTATCACTAAGCAAAGGGAAAAATGGACTGAAGAAGAGCATCAGAAGTTCCTTGAAGCTCTGAAATTGTATGGCCGAGGTTGGCGTCAAATTGAAGAACATGTAGGTACCAAAACTGCAGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTCTCTAAGCTAGAGCGTGAGTCAAATGGAATCATTGAAAGCCCCAATCAATCAATTGTGATTCCTCCTCCTCGGCATAAGAGAAAGCCTCTACATCCATATCCTCGCAAGCCAGTTGATTATTCTCATGGGAGGTCAAATTTGAATGCAAGGGAAAGACCTCCATCTCCTTACCTGCTGGCAGCAGGAAGAGAAACTCATTCTCCAACTTCAGTTTTATCTAGAGTTGATTCAGATTCATACGAGTCTGCCATTCCCGAGCAAACTGTGAGGTCTCTTTCACCAAGTTCCTGTCACACTGAAATGCATTCAATGAGCAAATCACATATTGAAAAGAATAATGACTGCATGACTTTGAAGTCATCTGAAGAAGCGAAGTCACATTGGTTATCAGTTTCCCAATCTGGTGGTGCAAGCTTGGAGAGCCTTTTCTCTCTGAAGTTTGAATCCAATTCAGAGGGAACCAAATCTTCTAAAGGAACTTCTGCAGATGATCAACCATCCACCGGAATCAAGCTATTTGGCAGGACAATATCCGTCTCCAATGTTGAGAAGCCATTGAGAGTTGCTGTTGAGGATCTCAAGTCAGTTTCATGTATGCACAGCCAGGGAAATCATGTTGTTGACAAAAAAAAGCTAGGCCTAGAATTACAACCACATCTAGATGTACATTTATCACTCGGCATGTCTTGTAGTAATTCAAATTCAACAAGAGGTGGAGAAAACATGAATTCCATGGAAGATCAGAAAGAGATGTTATTCTCTGTAGGCTCTGTCGCTAAGGTTTCTCTGCCAGGTTGGACATTTCAGCAAGGTTTATCAACATTAAACTCTGAACCATGTAACAAATTTGAATTTCCAACACCTTTGCATGCTCGTTTGATGGGAAGGATTGACTTCAGAAAAGGTACAAAAGAAAGTTCTTTCACTTGTTCTAGTTCTAGGTCAATTTGTGAATTGAGGAATGGTGACAAGAAATTAGGCATTGGGGACTCTGAAAATCAAGAACTTAATAATGAGGCTAGCATTGGCGCTGAAGAATCTTTAAAGTCAGTTGGAATAAGCCCCCGCAAGTCTACTGGGGGTTTTGTGCCCTATAAAAGATGCCTATCTGAGATTGCAGACTCTCTAGGTTCTGCATTGGAAGAGAGGAAAGGGCAAAGAGCTCGAGTTTGCTCATAG 1503 0.4152 MRLDSGVCAMGVQDESDITMSKTISIAGNNQVKGDTQSETLVLSKYTSSSLKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKLERESNGIIESPNQSIVIPPPRHKRKPLHPYPRKPVDYSHGRSNLNARERPPSPYLLAAGRETHSPTSVLSRVDSDSYESAIPEQTVRSLSPSSCHTEMHSMSKSHIEKNNDCMTLKSSEEAKSHWLSVSQSGGASLESLFSLKFESNSEGTKSSKGTSADDQPSTGIKLFGRTISVSNVEKPLRVAVEDLKSVSCMHSQGNHVVDKKKLGLELQPHLDVHLSLGMSCSNSNSTRGGENMNSMEDQKEMLFSVGSVAKVSLPGWTFQQGLSTLNSEPCNKFEFPTPLHARLMGRIDFRKGTKESSFTCSSSRSICELRNGDKKLGIGDSENQELNNEASIGAEESLKSVGISPRKSTGGFVPYKRCLSEIADSLGSALEERKGQRARVCS* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01236 500 CDD SANT 65 108 IPR001005 -
Pte5g01236 500 MobiDBLite consensus disorder prediction 258 277 - -
Pte5g01236 500 MobiDBLite consensus disorder prediction 122 207 - -
Pte5g01236 500 ProSiteProfiles SANT domain profile. 61 112 IPR017884 -
Pte5g01236 500 FunFam protein REVEILLE 6 isoform X1 65 113 - -
Pte5g01236 500 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Pte5g01236 500 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Pte5g01236 500 SUPERFAMILY Homeodomain-like 57 113 IPR009057 -
Pte5g01236 500 Gene3D - 65 111 - -
Pte5g01236 500 NCBIfam myb-like DNA-binding domain, SHAQKYF class 61 110 IPR006447 GO:0003677
Pte5g01236 500 Pfam Myb-like DNA-binding domain 63 106 IPR001005 -
Pte5g01236 500 MobiDBLite consensus disorder prediction 174 207 - -
Pte5g01236 500 SMART sant 62 110 IPR001005 -
Pte5g01236 500 PANTHER SWI/SNF COMPLEX-RELATED 46 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01236 Pte-Chr5 34204995 34208346 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pte5g01236 Myb_DNA-binding 9.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01236 - - gmx:778089 345.125