Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01235 ATGGAGTACGGCAGTGGAGGCAGTGGTTCTGGTGGGGACCATCACCCTGATTCATCTGATTCTCAGAGAAGAAAGAAGCGCCACCATCGTCACACTACATTCCAGATTCAAAGGCTTGAAGCAATGTTCAAGGAGTGTCCCCACCCAGATGAGAAGCAGAGGACTCAGTTAAGCAGGGAATTAGGCTTAGCTCCACGCCAAATCAAATTTTGGTTTCAGAACAGGAGAACACAGATGAAGGTACAACATGAAAGATCTGATAACTTTGCTCTCCGGGCAGCGAACGACAAGATACGATGTGAAAACATAGCAATCAGAGAAGCATTGAAAAATGTCATTTGTCCCACTTGTGGTGGCCCTCCTCTCAATGAAGATAGCTACTTCGATGAACAAAAGCTAAGAATCGAGAATGCCCAACTCAAAGAAGAGCTTGATAGAGTGTCTAGTATTGCTGCGAAGTACATGGGAAGACCATTTTCCCAAGTCCCACCAGTTCAGCCGACACATTTATCTTCATTGGATTTGTCAATGGGAAGCTTCGGAAATCATGGGATTCCAGGCCTTTCTCTTGATCTTGATCTCCCTCCAGGGTGTTCTTCCGCAATGCCAAGTTTGCCTTTTCAGCCTGCTTGCCTTTCAGACATGGATAAGTCTCTCATGAAAGACATTGCTGCCAATGCAATGCAAGAACTTCTGAGGCTTCTTCAGAACAATGAACCTCTATGGACGAAGTCGAGCACTGATGGAGCTGATGTTCTTAATTTTGAGCATTATGAAAGAATCTTTCCGAGGACTAGCAGTCAACTGAAAAATCCAAATGTCCGAATCGAGGCATCCCGAGATTCAGGTGTCGTGATCATGAATGGTTTGGCTTTGGTTGACATGTTTATGGACTCGAACAAGTGGATGGATCTATTTCCGACTATTGTCTCAATGTCAAAAACAATTGAAGTAATCTCAACTGGGGTGATGGGCGGTCATAATGGTGCTTTGCTACTGATGTATGAAGAGCTTCAAGTGCTTTCACCACTTGTTCCAACAAGGGAGTCCTATGTACTTCGTTACTGCCAGCAAATTGAGCAAGGCTTGTGGGCTATTGTTAATGTTTCTTATGATTTTCCACAAGAAAACCAGTTTTTGTCCCAACCGAGATCTTGTAGGCTTCCTTCTGGATGCATGATCCAGGATATGCCAAACGGTTATTCTAAGGTTACTTGGGTTGAACATGTCGAAATCGAAGATAAGGCACCAGTTAATCGGCTGTATAAGGATCTAATTTACAGTGGTTTTGCTTTTGGATCTGGAAGATGGCTAGCCACTCTTCAGAGAGCGTGTGAAAGATTTGTTTGCCTAATGGTTTCTGGTACTTCTACTCGTGATCTTGGAGGAGTAATTCCATCCCCAGAAGGCAAGAGGAGCTTGATGAAACTTGCACAGAGAATGGTTAACTACTTCTGTGCAAGCATAAGCTCGTCGAACAGTCACCAATGGACAACACTTTCCGGTTTGGATGAGGGAGTCATAATCACTATCCAAAGAAGCACAGATCCTGGGCATTCTAATGGTATGGTGCTTAGTGCAGCCACTACCATGTGGCTTCCAATTTCTCCACAAAATGTCTTTAACTTCTTCAAGGATGAAAGAAACAGATCTCAGTGGGATGTTTTGTCCAACGGCAATTCAGTACAAGAGGTTGCTCATATAGCAAATGGATCACATCCTGGGAACTGCATTTCTGTACTAAGGGCTTTGAATACAAGTCAGAACAACATGCTGATACTCCAAGAGAGCTGCATAGATTCATCTGGTTCGTTAGTAGTTTATTCTCCAGTGGATTTGCCTGCCATCAATGTAGCTATGAGTGGGGAGGACCCTTCATACATTCCACTGCTACCATCAGGATTTACAATCTTACCAGATGGTCAACCAGACCAAGGAGAAGGATCTTCAACAAGCTCACATACACATGGTAGCATGGGAGGGAGATCAAGTGGTTCGCTGATCACAGTTTCATTTCAAATACTAGTGAGCAACTTTCCATCTGCAAGGCTGAACTTGGAGTCAGTGACTACTGTTAATAACCTTATTGGCACCACTGTCCAGCAAATTAAATCTGCCTTGAATTGTTCTAGTTCCTGA 2139 0.4376 MEYGSGGSGSGGDHHPDSSDSQRRKKRHHRHTTFQIQRLEAMFKECPHPDEKQRTQLSRELGLAPRQIKFWFQNRRTQMKVQHERSDNFALRAANDKIRCENIAIREALKNVICPTCGGPPLNEDSYFDEQKLRIENAQLKEELDRVSSIAAKYMGRPFSQVPPVQPTHLSSLDLSMGSFGNHGIPGLSLDLDLPPGCSSAMPSLPFQPACLSDMDKSLMKDIAANAMQELLRLLQNNEPLWTKSSTDGADVLNFEHYERIFPRTSSQLKNPNVRIEASRDSGVVIMNGLALVDMFMDSNKWMDLFPTIVSMSKTIEVISTGVMGGHNGALLLMYEELQVLSPLVPTRESYVLRYCQQIEQGLWAIVNVSYDFPQENQFLSQPRSCRLPSGCMIQDMPNGYSKVTWVEHVEIEDKAPVNRLYKDLIYSGFAFGSGRWLATLQRACERFVCLMVSGTSTRDLGGVIPSPEGKRSLMKLAQRMVNYFCASISSSNSHQWTTLSGLDEGVIITIQRSTDPGHSNGMVLSAATTMWLPISPQNVFNFFKDERNRSQWDVLSNGNSVQEVAHIANGSHPGNCISVLRALNTSQNNMLILQESCIDSSGSLVVYSPVDLPAINVAMSGEDPSYIPLLPSGFTILPDGQPDQGEGSSTSSHTHGSMGGRSSGSLITVSFQILVSNFPSARLNLESVTTVNNLIGTTVQQIKSALNCSSS* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01235 712 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Pte5g01235 712 Gene3D - 220 431 IPR023393 -
Pte5g01235 712 SMART START_1 222 447 IPR002913 GO:0008289
Pte5g01235 712 MobiDBLite consensus disorder prediction 639 662 - -
Pte5g01235 712 SMART HOX_1 23 86 IPR001356 GO:0003677
Pte5g01235 712 SUPERFAMILY Bet v1-like 468 704 - -
Pte5g01235 712 ProSiteProfiles START domain profile. 213 450 IPR002913 GO:0008289
Pte5g01235 712 MobiDBLite consensus disorder prediction 1 32 - -
Pte5g01235 712 SUPERFAMILY Homeodomain-like 6 81 IPR009057 -
Pte5g01235 712 MobiDBLite consensus disorder prediction 643 662 - -
Pte5g01235 712 Pfam Homeodomain 25 80 IPR001356 GO:0003677
Pte5g01235 712 CDD START_ArGLABRA2_like 217 446 - -
Pte5g01235 712 SUPERFAMILY Bet v1-like 214 447 - -
Pte5g01235 712 FunFam Homeobox-leucine zipper protein HDG1 12 98 - -
Pte5g01235 712 Coils Coil 130 150 - -
Pte5g01235 712 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Pte5g01235 712 Gene3D - 12 95 - -
Pte5g01235 712 CDD homeodomain 25 83 IPR001356 GO:0003677
Pte5g01235 712 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 23 708 IPR042160 -
Pte5g01235 712 FunFam Homeobox-leucine zipper protein GLABRA 2 222 446 - -
Pte5g01235 712 Pfam START domain 223 447 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01235 Pte-Chr5 34196695 34200253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01235 20 708 Homeobox Transcription Factor Family AT1G73360 65.385 0.0 910
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte5g01235 START 3.3e-44 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01235 K09338 - tcc:18587139 1135.55