Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01223 ATGTTAGGCAATAACTCTTCATCCTCAGTTCCTTCTTCTGAACCATTTTCTAGCGTAGAAAATGGTACCAACCCCAACAAACGGAAACGACGGCCTGCAGGGACTCCTGATCCAGATGCTGAAGTGGTATCTCTTTCACCAAAAACGTTATTGGAATCGGATCGTTATGTCTGTGAGATCTGCAACCAAGGTTTTCAAAGGGACCAGAACCTTCAGATGCATAGGAGAAGACATAAGGTACCATGGAAGTTACTCAAGAGGGAGACACCAGTGGTGAGGAAGCGTGTGTTTGTGTGTCCAGAGCCAACATGTTTGCACCATGACCCTTGTCATGCTCTTGGTGATCTTGTTGGGATTAAGAAACATTTCAGAAGAAAACATAGCAATCACAAGCAATGGGTCTGTGAAAGATGTTCCAAAGGTTATGCTGTCCAGTCTGATTACAAAGCTCACCTTAAAACTTGTGGCACCAGAGGACATTCTTGTGATTGCGGTCGTGTTTTCTCAAGGGTGGAGAGTTTCATTGAACACCAAGATGCATGCAGCATGGGGCGTCTTCAGTCAGATCAAACACATACACTGCAGCGAGGCGCATGTTTGTCAAGAACAGCTTCAAGTCCAAGCCCTTCAAGTGAGACCAACCTCAGCACATCTCCTTGCCCAGCAGATCCTACCATAATTTGGAGCTTCAGCTTTCCACTGCCACACACCAAAAATACCGTCGATATTGCTCCATCACCCAAGATAGATGAAAACCGCACTACCCAGTTGCAACTCTCAATTGGTTCCTCTGAGTATGGGACCGATCAGAAACATGAATCAGACGGTAACAACAGAAACTCATCGAAAGAGAGTAGATGTAACAACAGTACCGCTGTTAATGACAAAACAAGCAGTACTGTTGCTTTCGTAAAAGAGCAAGCACTTGAGCAGCTAAGGATAGCCATGGCCGAAAAGGCCTACGCTGAAGAAGCAAGACAGCAAGCTAAAAGACAGATAGAATTGGCTGAGCTGGAGTTTTCAAACGCAAAGATAATAAGGCAACAAGCACAAGTTGAATTAGATAAAGCTTATGCACTTAGAGAACATGCAGTCCAGCAAATAAACTCTACTATTCTTCGGATCACTTGTCATAACTGCAAGCAGCAGTTCCAGAAAGAACATCAACGTTGGCAGCTACACGGGAAGAGAATTGTTTGGCACTAA 1206 0.4453 MLGNNSSSSVPSSEPFSSVENGTNPNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACSMGRLQSDQTHTLQRGACLSRTASSPSPSSETNLSTSPCPADPTIIWSFSFPLPHTKNTVDIAPSPKIDENRTTQLQLSIGSSEYGTDQKHESDGNNRNSSKESRCNNSTAVNDKTSSTVAFVKEQALEQLRIAMAEKAYAEEARQQAKRQIELAELEFSNAKIIRQQAQVELDKAYALREHAVQQINSTILRITCHNCKQQFQKEHQRWQLHGKRIVWH* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01223 401 SUPERFAMILY beta-beta-alpha zinc fingers 53 79 IPR036236 -
Pte5g01223 401 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Pte5g01223 401 SMART c2h2final6 133 160 IPR013087 -
Pte5g01223 401 SMART c2h2final6 97 127 IPR013087 -
Pte5g01223 401 SMART c2h2final6 56 78 IPR013087 -
Pte5g01223 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Pte5g01223 401 MobiDBLite consensus disorder prediction 1 45 - -
Pte5g01223 401 MobiDBLite consensus disorder prediction 199 219 - -
Pte5g01223 401 MobiDBLite consensus disorder prediction 261 293 - -
Pte5g01223 401 MobiDBLite consensus disorder prediction 1 23 - -
Pte5g01223 401 Coils Coil 305 346 - -
Pte5g01223 401 Gene3D Classic Zinc Finger 44 129 - -
Pte5g01223 401 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 327 IPR031140 -
Pte5g01223 401 FunFam protein indeterminate-domain 12-like 35 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01223 Pte-Chr5 33962778 33965572 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01223 4 385 C2H2 Transcription Factor Family AT1G25250 56.122 4.87e-140 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte5g01223 zf-met 0.022 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01223 K25871 - rcu:8261817 548.51