Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte5g01223 | ATGTTAGGCAATAACTCTTCATCCTCAGTTCCTTCTTCTGAACCATTTTCTAGCGTAGAAAATGGTACCAACCCCAACAAACGGAAACGACGGCCTGCAGGGACTCCTGATCCAGATGCTGAAGTGGTATCTCTTTCACCAAAAACGTTATTGGAATCGGATCGTTATGTCTGTGAGATCTGCAACCAAGGTTTTCAAAGGGACCAGAACCTTCAGATGCATAGGAGAAGACATAAGGTACCATGGAAGTTACTCAAGAGGGAGACACCAGTGGTGAGGAAGCGTGTGTTTGTGTGTCCAGAGCCAACATGTTTGCACCATGACCCTTGTCATGCTCTTGGTGATCTTGTTGGGATTAAGAAACATTTCAGAAGAAAACATAGCAATCACAAGCAATGGGTCTGTGAAAGATGTTCCAAAGGTTATGCTGTCCAGTCTGATTACAAAGCTCACCTTAAAACTTGTGGCACCAGAGGACATTCTTGTGATTGCGGTCGTGTTTTCTCAAGGGTGGAGAGTTTCATTGAACACCAAGATGCATGCAGCATGGGGCGTCTTCAGTCAGATCAAACACATACACTGCAGCGAGGCGCATGTTTGTCAAGAACAGCTTCAAGTCCAAGCCCTTCAAGTGAGACCAACCTCAGCACATCTCCTTGCCCAGCAGATCCTACCATAATTTGGAGCTTCAGCTTTCCACTGCCACACACCAAAAATACCGTCGATATTGCTCCATCACCCAAGATAGATGAAAACCGCACTACCCAGTTGCAACTCTCAATTGGTTCCTCTGAGTATGGGACCGATCAGAAACATGAATCAGACGGTAACAACAGAAACTCATCGAAAGAGAGTAGATGTAACAACAGTACCGCTGTTAATGACAAAACAAGCAGTACTGTTGCTTTCGTAAAAGAGCAAGCACTTGAGCAGCTAAGGATAGCCATGGCCGAAAAGGCCTACGCTGAAGAAGCAAGACAGCAAGCTAAAAGACAGATAGAATTGGCTGAGCTGGAGTTTTCAAACGCAAAGATAATAAGGCAACAAGCACAAGTTGAATTAGATAAAGCTTATGCACTTAGAGAACATGCAGTCCAGCAAATAAACTCTACTATTCTTCGGATCACTTGTCATAACTGCAAGCAGCAGTTCCAGAAAGAACATCAACGTTGGCAGCTACACGGGAAGAGAATTGTTTGGCACTAA | 1206 | 0.4453 | MLGNNSSSSVPSSEPFSSVENGTNPNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACSMGRLQSDQTHTLQRGACLSRTASSPSPSSETNLSTSPCPADPTIIWSFSFPLPHTKNTVDIAPSPKIDENRTTQLQLSIGSSEYGTDQKHESDGNNRNSSKESRCNNSTAVNDKTSSTVAFVKEQALEQLRIAMAEKAYAEEARQQAKRQIELAELEFSNAKIIRQQAQVELDKAYALREHAVQQINSTILRITCHNCKQQFQKEHQRWQLHGKRIVWH* | 402 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte5g01223 | 401 | SUPERFAMILY | beta-beta-alpha zinc fingers | 53 | 79 | IPR036236 | - | |
Pte5g01223 | 401 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 58 | 78 | IPR013087 | - | |
Pte5g01223 | 401 | SMART | c2h2final6 | 133 | 160 | IPR013087 | - | |
Pte5g01223 | 401 | SMART | c2h2final6 | 97 | 127 | IPR013087 | - | |
Pte5g01223 | 401 | SMART | c2h2final6 | 56 | 78 | IPR013087 | - | |
Pte5g01223 | 401 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 56 | 78 | IPR013087 | - | |
Pte5g01223 | 401 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Pte5g01223 | 401 | MobiDBLite | consensus disorder prediction | 199 | 219 | - | - | |
Pte5g01223 | 401 | MobiDBLite | consensus disorder prediction | 261 | 293 | - | - | |
Pte5g01223 | 401 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Pte5g01223 | 401 | Coils | Coil | 305 | 346 | - | - | |
Pte5g01223 | 401 | Gene3D | Classic Zinc Finger | 44 | 129 | - | - | |
Pte5g01223 | 401 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 14 | 327 | IPR031140 | - | |
Pte5g01223 | 401 | FunFam | protein indeterminate-domain 12-like | 35 | 103 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte5g01223 | Pte-Chr5 | 33962778 | 33965572 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte5g01223 | 4 | 385 | C2H2 Transcription Factor Family | AT1G25250 | 56.122 | 4.87e-140 | 403 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Pte5g01223 | zf-met | 0.022 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte5g01223 | K25871 | - | rcu:8261817 | 548.51 |