Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01220 ATGGTACCAACCCCAACAAACGGAAACGACGGCCTGCAGGGACTCCTGATCCAGATGCTGAAGTGGTATCTCTTTCACCAAAAAACGTTATTGGAATCGGATCGTTATGTCTGTGAGATCTGCAACCAAGGTTTTCAAAGGGACCAGAACCTTCAGATGCATAGGAGAAGACATAAGGTACCATGGAAGTTACTCAAGAGGGAGACACCAGTGGTGAGGAAGCGTGTGTTTGTGTGTCCAGAGCCAACATGTTTGCACCATGACCCTTGTCATGCTCTTGGTGATCTTGTTGGGATTAAGAAACATTTCAGAAGAAAACATAGCAATCACAAGCAATGGGTCTGTGAAAGATGTTCCAAAGGTTATGCTGTCCAGTCTGATTACAAAGCTCACCTTAAAACTTGTGGCACCAGAGGACATTCTTGTGATTGCGGTCGTGTTTTCTCAAGGGTGGAGAGTTTCATTGAACACCAAGATGCATGCAGCATGGGGCGTCTTCAGTCAGATCAAACACATACACTGCAGCGAGGCGCATGTTTGTCAAGAACAGCTTCAAGTCCAAGCCCTTCAAGTGAGACCAACCTCAGCACATCTCCTTGCCCAGCAGGTACTTTGATAATGCCAAAGCCGAATGAAACCACATTAATCTTGAACCCTACTCCTTCTACTACCACAGCTGCTATTGCTGAAAACTTAACCAAGAGCAACAATAGATCCTACCATAATTTGGAGCTTCAGCTTTCCACTGCCACAACCAAAAATACCGTCGATATTGCTCCATCACCCAAGATAGATGAAAACCGCACTACCCAGTTGCAACTCTCAATTGGTTCCTCTGAGTATGGGACTGATCAGAAACATGAATCAGACGGTAACAACAGAAACTCATCGAAAGAGAGTAGATGTAACAACAGTACCGCTGTTAATGACAAAACAAGCAGTACTGTTGCTTTCGTAAAAGAGCAAGCACTTGAGCAGCTAAGGATAGCCATGGCCGAAAAGGCCTACGCTGAAGAAGCAAGACAGCAAGCTAAAAGACAGATAGAATTGGCTGAGCTGGAGTTTTCAAACGCAAAGATAATAAGGCAACAAGCACAAGTTGAATTAGATAAAGCTTATGCACTTAGAGAACATGCAGTCCAGCAAATAAACTCTACTATTCTTCGGATCACTTGTCATAACTGCAAGCAGCAGTTCCAGGAAAGAACATCAACGTTGGCAGCTACACGGGAAGAGAATTGTTTGGCACTAAGTTACATGTCGTCTGCTGTAACGAAAGAAGGTGGTGAAGTAGAGAACGATAGTAGAAACGGCCATGGAAAGACAGCAATGTCATAG 1338 0.4432 MVPTPTNGNDGLQGLLIQMLKWYLFHQKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACSMGRLQSDQTHTLQRGACLSRTASSPSPSSETNLSTSPCPAGTLIMPKPNETTLILNPTPSTTTAAIAENLTKSNNRSYHNLELQLSTATTKNTVDIAPSPKIDENRTTQLQLSIGSSEYGTDQKHESDGNNRNSSKESRCNNSTAVNDKTSSTVAFVKEQALEQLRIAMAEKAYAEEARQQAKRQIELAELEFSNAKIIRQQAQVELDKAYALREHAVQQINSTILRITCHNCKQQFQERTSTLAATREENCLALSYMSSAVTKEGGEVENDSRNGHGKTAMS* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01220 445 MobiDBLite consensus disorder prediction 179 201 - -
Pte5g01220 445 MobiDBLite consensus disorder prediction 296 311 - -
Pte5g01220 445 Coils Coil 320 361 - -
Pte5g01220 445 MobiDBLite consensus disorder prediction 276 311 - -
Pte5g01220 445 SUPERFAMILY beta-beta-alpha zinc fingers 23 80 IPR036236 -
Pte5g01220 445 MobiDBLite consensus disorder prediction 179 214 - -
Pte5g01220 445 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 345 IPR031140 -
Pte5g01220 445 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 58 IPR013087 -
Pte5g01220 445 Gene3D Classic Zinc Finger 19 76 - -
Pte5g01220 445 SMART c2h2final6 113 140 IPR013087 -
Pte5g01220 445 SMART c2h2final6 36 58 IPR013087 -
Pte5g01220 445 SMART c2h2final6 77 107 IPR013087 -
Pte5g01220 445 Pfam Zinc finger, C2H2 type 36 58 IPR013087 -
Pte5g01220 445 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Pte5g01220 445 MobiDBLite consensus disorder prediction 426 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01220 Pte-Chr5 33885102 33887836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01220 28 433 C2H2 Transcription Factor Family AT2G01940 53.606 3.92e-129 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte5g01220 zf-C2H2 0.0042 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01220 K25871 - gmx:100800187 553.132