Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01218 ATGGAAGGTGAGATTGACACAAATGCCGTGTATAGAGAATGTTTGAGAAACCATGCAGCTAGCCTCGGAAGTTATGCCACGGATGGGTGTGGTGAGTTTACATTAGATGATAATTCACCAGGTGGGCTACAATGTGCAGCATGTGGCTGCCACCGCAACTTTCACCGGAAAATGTTATGTCTGACAAGCCGTTTGGGGAGAACCGGCTTTAACAGTCGTGGAAGAGACATAGAAATGACAACACATCATGAGCTCATCGACTATGGTTGTGGAGGTGGGAGTGGGAGTGAAGGGAGAGTACCTAATACTATGGCTGAATCTGGGGAGGCAGACCGGTCAGGGAAGAAGCGGCTCAGGACAAAGTTCACAGCAGATCAGAAGGAGAAGATGTTGGCGTTTGCAGAGAAGCTGGGGTGGAAGCTGCTGAGGAAAGATCTTGAAGATGAGATTGAAAGGTTCTGCACAGAAGTTGGCGTGAGTAAACAAGTCTTCAAGGTGTGGATGCATAACCACAAGAATTCCTCATCATCGTCTTCTGCTTCCACAGGCAATAATGCCTCATCTCTCACCCAGTAG 576 0.4809 MEGEIDTNAVYRECLRNHAASLGSYATDGCGEFTLDDNSPGGLQCAACGCHRNFHRKMLCLTSRLGRTGFNSRGRDIEMTTHHELIDYGCGGGSGSEGRVPNTMAESGEADRSGKKRLRTKFTADQKEKMLAFAEKLGWKLLRKDLEDEIERFCTEVGVSKQVFKVWMHNHKNSSSSSSASTGNNASSLTQ* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01218 191 NCBIfam homeobox domain, ZF-HD class 115 173 IPR006455 -
Pte5g01218 191 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 174 - -
Pte5g01218 191 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 11 58 IPR006456 -
Pte5g01218 191 FunFam Zinc-finger homeodomain protein 2 102 177 - -
Pte5g01218 191 Pfam ZF-HD protein dimerisation region 9 58 IPR006456 -
Pte5g01218 191 MobiDBLite consensus disorder prediction 97 116 - -
Pte5g01218 191 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 11 57 IPR006456 -
Pte5g01218 191 MobiDBLite consensus disorder prediction 171 191 - -
Pte5g01218 191 SUPERFAMILY Homeodomain-like 103 173 IPR009057 -
Pte5g01218 191 Gene3D - 101 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01218 Pte-Chr5 33859167 33859742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01218 11 174 ZF-HD Transcription Factor Family AT4G24660 45.087 2.15e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pte5g01218 ZF-HD_dimer 4.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01218 - - jre:109020973 252.677