Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01206 ATGGTGCTAGGCTGGAGAAAAAGGAAGAGCAACGACAGAAATGGGGTGAAACCCGACATGGAGATAGTGACACCAAACTATTTCAGGTGTCCTATATCTCTTGATCTTATGAAAGATCCCGTTACATTGTCAACTGGTATAACGTACGATCGTGAAAGCATTGAGAGGTGGTTTGAGGATGGGAATGATACGTGTCCAGTTACGAATCAGATTGTTAGCAATTTTGATCAAATTCCTAATCATTCCCTTCGGATGATGATTCAAGATTGGTGTGTGCAGAATCAGCAGTTCGGTGTCAAAAGAATACAGACACCGAGAACTCCGATCTCGTCTAGGGAGGTGTATGAGCTTCTGCAGCTTATGAAGGACACGGCTCGGCGGGGCGATCAGTGTGGATGCTTGGAATCGGTGCAGAAGATTGAGAGGTGGGGTGGTGAGAGTGAAAGAAACAAGAGGTGTATTATAGACAATGGAGCTGCTGAGGTGTTTGCAGCTGCATTCGATGCTTTTGCCGTTGATTCGGTTGAGAAATATGCAAGTTTTTTGGAGGAGATTTTGTCTGCTTTGAATTGGATGTTCCCACTCACCAAGGAAGCTCAGAGATTTCTGGGATCAAGGAATTCTATGCGTTGCATGGTCTGGTTTTTGAAGCAACAAGATGTTTCTAGAAAGCAAAAATCGATTCTCGTATTGAGAGAAGTGCTTTCTTATGGTGATCGGGGGCACTTGGAGGTTCTGTCAGACATGGACGGAGTCAATGAGTTACTGATGGAGTTTATCAACAAAAGGATATGTCCAACTCCAACCCTTGCAAAAGCTTCATTGGCTATTGTTCAATACATGGTGGCATCCTCTTCTCCTTCATCTGAGAAAATAAAATTGTCATTTGTCCAACTCGGCATCATCTCCTCACTCCTTGAGATTCTCATAGACTCAGACAAAACCCTTTGTGAGATGGCATTGGGTGTGTTTGATTCACTTTGCAGCTGTGAAGAAGCAAGAGAAAAGGCTTATGCCAATGCTTTGACCATTCCAGTTTTGGTGAAGAAGATCTTAAGGGTGTCAGAACTGGCAACGGAATTTTCGGTTTCTGCGATATGGAAGCTTGTCAAGAATGGAGGGAAGGTAGATGAGAGAGTCATGGTAGACGCACTTCAAGTGGGTGCCTTTCAAAAGCTTTTGTTGATATTGCAGATTGGTGGGGGTGATGAGACAAAGGAGAAAATAACTGAGCTTCTTAAACTGCTGAATCCTTACAGGGCAGGTCTGGAATGCATAGAGTCAGTGGATTTCAAAAATCTCAAGAGGTCATTTTGA 1317 0.4358 MVLGWRKRKSNDRNGVKPDMEIVTPNYFRCPISLDLMKDPVTLSTGITYDRESIERWFEDGNDTCPVTNQIVSNFDQIPNHSLRMMIQDWCVQNQQFGVKRIQTPRTPISSREVYELLQLMKDTARRGDQCGCLESVQKIERWGGESERNKRCIIDNGAAEVFAAAFDAFAVDSVEKYASFLEEILSALNWMFPLTKEAQRFLGSRNSMRCMVWFLKQQDVSRKQKSILVLREVLSYGDRGHLEVLSDMDGVNELLMEFINKRICPTPTLAKASLAIVQYMVASSSPSSEKIKLSFVQLGIISSLLEILIDSDKTLCEMALGVFDSLCSCEEAREKAYANALTIPVLVKKILRVSELATEFSVSAIWKLVKNGGKVDERVMVDALQVGAFQKLLLILQIGGGDETKEKITELLKLLNPYRAGLECIESVDFKNLKRSF* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01206 438 SUPERFAMILY ARM repeat 117 413 IPR016024 -
Pte5g01206 438 SUPERFAMILY RING/U-box 22 99 - -
Pte5g01206 438 SMART Ubox_2 27 90 IPR003613 GO:0004842|GO:0016567
Pte5g01206 438 Pfam U-box domain 25 95 IPR003613 GO:0004842|GO:0016567
Pte5g01206 438 Gene3D - 113 416 IPR011989 -
Pte5g01206 438 PANTHER WDSAM1 PROTEIN 21 417 IPR045185 GO:0061630
Pte5g01206 438 CDD RING-Ubox_PUB 25 76 IPR045210 -
Pte5g01206 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 104 IPR013083 -
Pte5g01206 438 ProSiteProfiles U-box domain profile. 23 97 IPR003613 GO:0004842|GO:0016567
Pte5g01206 438 FunFam RING-type E3 ubiquitin transferase 24 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01206 Pte-Chr5 33691821 33693920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01206 5 439 U-box Gene Family AT5G37490 42.697 3.78e-116 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01206 - - qsa:O6P43_008457 593.193