LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte5g01200	ATGGCGCTTATAGAAGCTCGTGATTCCAGTTCTTATTCCTACAAAGTATGGAAATCTGAATATGACGTGTTCTTAAGTTTCAGAGGGGAAGATACCCGCTTTGGTTTTACAGGTCATCTATACGATGCTTTGACTAGAACAGGAATCAAAGCTTTTATAGACGATGAATGCCTTACAAGGGGTGTGGAAATTTCACCAGATCTTGTCAAAGCCATTGAAGGATCAAGGGCGTCTATCATTGTGTTTTCTGAAAACTACGCCTCTTCCCGTTGGTGTCTTGACGAGCTTGTCAAGATTCTTGACTGTGTGGATCTCAGAGGGCAGTTGGTTCTGCCTGTGTTTTACAAGATCGATCCTTCTATGGTAAAAAAACAAACAGGTCCTTATGAAAAAGCCATGGTTGAGTATGAAAATCAGCTGAGATATGAAAATCATAAAGTCGCCCAATGGAGGTCTGCTTTGCACCAAGCTGCAAACATGTCTGGCTGGCATGTAGAATTCGGGTATGAATTTCAGTTTATTAAGAGTATAGTTGAAAATGTCACCACTAGACTGAATCGCCAAATGTTGCATGTTACTGCTTATCCTGTCGGACTTGAGTCTCGCACATCACAAGTCATTTCACGATTGGGCCTTCAGGAGTTCAAGGATGATGTTCGCTTGATAGGAATCTATGGGATGGGTGGGATTGGTAAATCGACAACAGCAAGAGCTTTGTATAACTTGATTGCTCCTCAATTTGATGGTGCATGTTTCCTTAGTGAAGTGAGAGAGAATTCTTCTCTGAGAGGAGGTTTAGTGGCTCTGCAAGAAAAATTTCTTCGTGATATTCTTGGTGGTAAGAACAAGATCGAGTTGGGTGACGTCTACAAAGGAATCTCTGTCATCAGAAAAAGATTGTGTGATAAGAAAATTCTTCTGATTCTTGATGATGTGAATAAACTAGAGCAGTTAGAAGCATTAGCAGGAATGCCTGATTGGTTTGGCCATGGCAGTAGAATACTGATAACAACAAGGGATAAGCATTTTCTAACTGCTCATAATGTTAGCAGCATATATGAGGTGGATTTATTAAATGAAGTTCAAGCTATGGAGCTCTTCAGTTGGCATGCCTTCGGGAGAAGACAACCAGACTCAATTTATCAGGACATTTCGAAGCGAGTGGTGAATTATGCTGAGTGCCTTCCACTGGCTCTTGAAGTAATAGGGAGAGCTTTTATTGGTAGAAGGTTGGAGGACTGGGAAGATGCGTTAGATAAATATAAAAGCATCCCTGAAGGAGATATCGTTAACAAACTTAAAATAAGCTATGATGAACTGGACGATTTTGAGAGAAAAATCTTCCTTGATATTGCATGTTTCTTCAAAGGAATGGATTTGAAATATGTACACACTATATTAAAATCTTCTGATCTGAACCCAACTATTGGTTTGAAGAAACTGGTCGAGAGAGGACTTTTAACTGAAAGCTACCATAAGGTTCAGATGCATTGTCTGATACAGGAGATGGGAAGGGAAATAGTTCGAAGGGAATCACCATCCAACGTTGGGAAACGTAGCAGATTGTGGCGTCAGGATGATGTTATTCAAGTGTTAGCTGATGACACTGGAACGAAGGCAGTAGAAGGTATCATGTTAGACCTGCCTGAATTGGAGGAGATAGAATGGAATGCTTTCATCCAAGGAAACTCACCATACTCAAAGTCCCTTATAGTCATCTCTCATTATCGGAAATGCCATTCAAGAGGTTGGAGACTCTTAACAGAAATGGATTTCTCATGCTGTGACTTCATAACTAAAGTACCTGACTTGTCTGGAGTCCCAAATTTAGAAGTACTTGACGTAGCTGAATGTCTGAATTTGATGGAGATTCATGATTCTGTTGGATCTCTTGGCAAGCTTGTCAAATTAAGTGCCCTTGGATGTTGTGAGCTTTCAACTCTTCCTCAGGCCTTGAAGCTTAGAAAACTTGCAACACTTTATCTAGCAGAATGCCCCAAACTTAGGCCATTTCCAGACATACAGGCATTGGAAAATCTTCGATTTCTTCAGATAGATGGAACTGGCATTGAAGCATTATTTCCATCTACAATTAAATATTTGACTACTTTGGAGAGATTACGTTTGGAAAATGGCAAAAGATTGGAGTTTGTTCTGCATACTATTGCCCAGATGAAATCGCTTGAGTGTCTTCTGTTTCTCCGCTGTCCACTGATTGGTAATGCTCTTTCACGTTGGGATGAATCCTTTGAGGAGGATTGCTCAAAATCATCATCATCATCATCATTTTCATTGTCAATGAAATCATTTGATCTCAATATCTGTTATAATATTTCAGAGCTCTATCTAGATGAATGCAATTTACTAGATGAACACCTTGCCTTGATTCCCAAGTTTTTCCCCTTGTTGCAATATTTGTCTCTAAGAAAAAATCAGTTTGAGGCCGTTCCAGAGTGCTTCCGAGCATTTAAGCGTCTAGAGATACTGACATTAGATGACTGTAGGAAGCTTCAAGAATTTCCAAATATCCTTCCATATATGCCAAAATTGAGAAAGATAAATGCAATGAATTGCGGGGCTTTGAGCTCACAGTCTGTGGATTCATTATTGAAGAATATGGTGAAGGTTCCAAGTGAAGAAAAACGAAAGAGACATATTTTGATCATCAGATTTTTCCTCAACTTATGTCTATGGATCAAGGAAGGTATAGGATTTAGAAGAGAAATCTGTAGAATCCAAGGCCAAGCAATGCTTTTTGAGCACTGTCAATGTAATTGTGAGCTCAAAGTGATGACTCATTGGAAGAAGGTTCTGGATTGTTGTTAA	2826	0.3956	MALIEARDSSSYSYKVWKSEYDVFLSFRGEDTRFGFTGHLYDALTRTGIKAFIDDECLTRGVEISPDLVKAIEGSRASIIVFSENYASSRWCLDELVKILDCVDLRGQLVLPVFYKIDPSMVKKQTGPYEKAMVEYENQLRYENHKVAQWRSALHQAANMSGWHVEFGYEFQFIKSIVENVTTRLNRQMLHVTAYPVGLESRTSQVISRLGLQEFKDDVRLIGIYGMGGIGKSTTARALYNLIAPQFDGACFLSEVRENSSLRGGLVALQEKFLRDILGGKNKIELGDVYKGISVIRKRLCDKKILLILDDVNKLEQLEALAGMPDWFGHGSRILITTRDKHFLTAHNVSSIYEVDLLNEVQAMELFSWHAFGRRQPDSIYQDISKRVVNYAECLPLALEVIGRAFIGRRLEDWEDALDKYKSIPEGDIVNKLKISYDELDDFERKIFLDIACFFKGMDLKYVHTILKSSDLNPTIGLKKLVERGLLTESYHKVQMHCLIQEMGREIVRRESPSNVGKRSRLWRQDDVIQVLADDTGTKAVEGIMLDLPELEEIEWNAFIQGNSPYSKSLIVISHYRKCHSRGWRLLTEMDFSCCDFITKVPDLSGVPNLEVLDVAECLNLMEIHDSVGSLGKLVKLSALGCCELSTLPQALKLRKLATLYLAECPKLRPFPDIQALENLRFLQIDGTGIEALFPSTIKYLTTLERLRLENGKRLEFVLHTIAQMKSLECLLFLRCPLIGNALSRWDESFEEDCSKSSSSSSFSLSMKSFDLNICYNISELYLDECNLLDEHLALIPKFFPLLQYLSLRKNQFEAVPECFRAFKRLEILTLDDCRKLQEFPNILPYMPKLRKINAMNCGALSSQSVDSLLKNMVKVPSEEKRKRHILIIRFFLNLCLWIKEGIGFRREICRIQGQAMLFEHCQCNCELKVMTHWKKVLDCC*	942

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte5g01200	941	Gene3D	-	187	353	IPR027417	-
	Pte5g01200	941	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	185	451	IPR027417	-
	Pte5g01200	941	SUPERFAMILY	"Winged helix" DNA-binding domain	428	532	IPR036390	-
	Pte5g01200	941	Pfam	TIR domain	21	186	IPR000157	GO:0007165
	Pte5g01200	941	SUPERFAMILY	L domain-like	581	875	-	-
	Pte5g01200	941	Gene3D	-	357	441	IPR042197	-
	Pte5g01200	941	SMART	till_3	20	160	IPR000157	GO:0007165
	Pte5g01200	941	FunFam	Disease resistance protein (TIR-NBS-LRR class)	17	187	-	-
	Pte5g01200	941	Gene3D	-	18	186	IPR035897	-
	Pte5g01200	941	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	21	861	IPR044974	GO:0006952
	Pte5g01200	941	SUPERFAMILY	Toll/Interleukin receptor TIR domain	11	163	IPR035897	-
	Pte5g01200	941	Gene3D	Ribonuclease Inhibitor	674	881	IPR032675	-
	Pte5g01200	941	Gene3D	Ribonuclease Inhibitor	572	673	IPR032675	-
	Pte5g01200	941	PRINTS	Disease resistance protein signature	392	406	-	-
	Pte5g01200	941	PRINTS	Disease resistance protein signature	221	236	-	-
	Pte5g01200	941	PRINTS	Disease resistance protein signature	299	313	-	-
	Pte5g01200	941	PRINTS	Disease resistance protein signature	605	621	-	-
	Pte5g01200	941	ProSiteProfiles	TIR domain profile.	19	185	IPR000157	GO:0007165
	Pte5g01200	941	Pfam	NB-ARC domain	213	427	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte5g01200	Pte-Chr5	33644919	33649984	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte5g01200	20	736	WRKY Transcription Factor Family	AT4G12020	29.156	1.18e-73	264

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte5g01200	-		-	ccaj:109810288	718.383