LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte5g01191	ATGACACTTGTAGAAGCTCATGGTTCCAGTTTTTATCACAGTAGAGCCTGCAAATCTCAATATGAAGTGTTCTTAAGTTTCCGAGGGGAAGATACCCGATATGGTTTTACAGGTCATCTATACGATACTTTGATTAGAGCAGGAATCAGAGCTTTTATAGACGATGAATGCCTTACAAGGGGTGTCGAAATCTCACCAGATCTAGTCAAAGCTATTGAGGGATCAAGGGCGTGTATCATTGTGTTTTCTGAAAACTATGCTTCTTCCAGTTGGTGTCTTGATGAGCTTGTCAAGATTCTTAGCTGTATGGAGCTCAGAGGGCAGTTGGTTCTGCCTGTGTTTTACAAGATCGATCCTTCTATGGTAAGAACACAAACAGGTCCTTATGAAAAAGCTATGGCTGAGTATGAAAACCAGCCGAGATATGACAATTGTAAAGTCGCCGAATGGAGGTTTGCTTTGCGCCAAGCTGCGAACTTGTCTGGCTGGCATGTAGATTTCGGGTATGACTTTCAGTTTATTCAGAGTATAGTTGAAAATGTCTCCATTAGATTGAATCGCCAAATGTTGCATGTTACTGCTTATCCTGTTGGACTTGAGTCTCCCACATCACAAGTCATTTCACGATTAGGCCTTCATGAGCTCAATGATGATGTTCGCATGGTAGGAATCTATGGGATGGGTGGGATTGGTAAATCGACCATAGCAAGAGCAGTGTACAACTTGATTGCTCCTCGATTTGATGGTGCATGTTTCCTTAGTGAAGTCAGAGAGACCTCTTCTCAGAGAGGAGGTTTAGTAGCTCTGCAAGAAAAACTTCTTCGTGATATTCTTGGTGGTAAGAACAAGATGGATTTGGGTGACGTCTACAAAGGAATCTCTGTCATCAGACAAAGATTGTGTGATAAGAAAATTCTTCTGATTCTTGATGATGTGAATAAACAAGAGCAGTTAGAAGCATTAGCAGGAATGCCTGATTGGTTTGGTTCTGGCAGTAGAATACTGCTAACAACAAGAGATAAGCATTTGCTAACTGCTCATAATGTTAGCAGCATATATGAAGTGGATTTATTAAATGAAGTTCAAGCTATGGAGCTCTTCAGTTGGCATGCCTTCAGGAAAAGACAACCGGATTCAATTTATCAGGACATTTCAAAACGTGTGGTGAATTATGCTGAGTGCCTTCCACTGGCTCTTGAAGTAATTGGGAGAGCTTTTATTGGTAGAAGGTTGGAGGACTGGGAAGATGCGTTAGATAAATATAAAAGCATCCCTGAAGGAGATATCGTTAACAAACTTAAAATAAGCTATGATGAACTGGACGATTTTGAGCGAAAAATCTTCCTTGATATTGCATGTTTCTTCAAGGGAATGGATTTGAAATATGTACACACTATATTAAAATCTTCTGATCTGAACCCAACTATTGGCTTGAAGAAACTTGCTGAGAGAGCCTTGTTAAACATATCAGCGGATCATTTTCTCTCAATGCATAGCCTGATACAGGACATGGGAAGGGAAGTTGTTCGAAGACAATCTCCATCCAATGCTGGGAAACGAAGCAGATTGTGGCATCATGAGGATGTCATTCAAGTGCTCACTGACAATATGGGATCCGATGAAGTACAAGGTATAGTGTTAGACCTTTCTCATCTGGATCAAACAAAAGAATTAGAGTGGAGTGGTGAGTCTTTTGAAAAGATGAAGAATCTACGAATACTTGTAATTAAAAATGCTTGCTTTTCTGCTGCCCCAACTTTTCTTCCCAACAATTTGAGATTACTTCATTGGGAGAGTTATCCTTCATCATCTTTTCCAGCTGGTTTTTATCCACAAAAACTTGGTGTACTCGAAGTTCCTAGGAGTTATCTCACGTTAGAAATGCCATTCCAGAAGTTTTTGTCTCTGACATGCTTGAATCTATCAGACTGTGATGCTCTAACTAAAGTACCTGACTTATCTGGACTACCAAATTTAGAGGAACTTGATCTAAGTTCTTGTCAGAATTTGGTTGAGGTTCATGATTCTGTAGGATTTCTAGGCAAGCTTGTCTCATTACATGCTAGTAATTGCTGTGAACTTAAAAGGTTCCCTCGTGGCTTCAAGTTGAAATCTCTTCAATGGCTTATTCTGGATCGATGCTCAAAACTTGAGACGTTTCCAGACATACTGGAAAGGATGGAAAATGTCATACAGGTTGATCTAAGAATGACTACCATAGAAGAATTGCCACCTTCAATTGAAAATCTGACTTCGTTAAGATTTTTACATCTTGGAAACTGCGAGAGACTAAAGTATGTTTCACATCACATCGGTACCCTGCAAGCACTTTACCTTCTTACTTTTGAAGGAAATCCAATGATTCGAAATGTATTTTCACGCTGGGATGATTTTTCGGCCCTGTGGCCATTGCATCATTTCAATTACTTCTGTCATCTGGCAGCACTGGATCTTAGTAACTGTGAACTGTTGGATGAAGATCTTCCCTTGATTCCTAGATTATTTCCCTGGGTGGCAACATTATATCTATGTGGAAACCATTTTGAAACCATTCCCACTTGTTTCCAAGAATTCCAGCGTTTAGAGGACCTAAGGTTGAATGACTGTAAGAAGCTTCGAGAAATTCCAAATATTGTTGCATATATGCCAAAATTGCAAAGAATACAAACATTTAACTGTGCAGCATTGAGCTCTCAGTCTGTTGATTTCATTTTGGAAATGGGAAAGAAGTTTCAGAGGCCAAGGGCTTTTCGTTTGAGTTTCCAAGCATGGAGTCCCAGACATATTGCAGTGCCAGGAATAAGGATTCCAGAATGGATTATGGGGGACTTTACAAGGACATTCAAGTTCACTTTATCCTTGTACATTAATAAAAGAGAACTGTCATTGACTCGTAAAAATTTTCAGTCCAGATGCAATGGTCACTTGTGGTTATTTGATCCAATGGATGGAAGCTTCACGCATCATATACAAAATAACTGGGATGTTTGCAATTCGAATCACGTGGAAATCTCTTTCATTTTTAGTGATGAATCGCATGATGTTTCCATCTTTGCTGAAAGTCAGCCTCAGCCAATTATCAGAGAGTGTGGTATTTACTTTTGTGAAGAAGAGACCCATATTGAAGATATTCGCTTTTCATGTACTTCAGGTCCAGAGAAGCCAAAACTGCTTATTACTGACGGTGCTGCTGAAGGGGAAATGTTGAAAATGAAGCTCACTCGAAAAGATGAAAGGTGA	3240	0.3966	MTLVEAHGSSFYHSRACKSQYEVFLSFRGEDTRYGFTGHLYDTLIRAGIRAFIDDECLTRGVEISPDLVKAIEGSRACIIVFSENYASSSWCLDELVKILSCMELRGQLVLPVFYKIDPSMVRTQTGPYEKAMAEYENQPRYDNCKVAEWRFALRQAANLSGWHVDFGYDFQFIQSIVENVSIRLNRQMLHVTAYPVGLESPTSQVISRLGLHELNDDVRMVGIYGMGGIGKSTIARAVYNLIAPRFDGACFLSEVRETSSQRGGLVALQEKLLRDILGGKNKMDLGDVYKGISVIRQRLCDKKILLILDDVNKQEQLEALAGMPDWFGSGSRILLTTRDKHLLTAHNVSSIYEVDLLNEVQAMELFSWHAFRKRQPDSIYQDISKRVVNYAECLPLALEVIGRAFIGRRLEDWEDALDKYKSIPEGDIVNKLKISYDELDDFERKIFLDIACFFKGMDLKYVHTILKSSDLNPTIGLKKLAERALLNISADHFLSMHSLIQDMGREVVRRQSPSNAGKRSRLWHHEDVIQVLTDNMGSDEVQGIVLDLSHLDQTKELEWSGESFEKMKNLRILVIKNACFSAAPTFLPNNLRLLHWESYPSSSFPAGFYPQKLGVLEVPRSYLTLEMPFQKFLSLTCLNLSDCDALTKVPDLSGLPNLEELDLSSCQNLVEVHDSVGFLGKLVSLHASNCCELKRFPRGFKLKSLQWLILDRCSKLETFPDILERMENVIQVDLRMTTIEELPPSIENLTSLRFLHLGNCERLKYVSHHIGTLQALYLLTFEGNPMIRNVFSRWDDFSALWPLHHFNYFCHLAALDLSNCELLDEDLPLIPRLFPWVATLYLCGNHFETIPTCFQEFQRLEDLRLNDCKKLREIPNIVAYMPKLQRIQTFNCAALSSQSVDFILEMGKKFQRPRAFRLSFQAWSPRHIAVPGIRIPEWIMGDFTRTFKFTLSLYINKRELSLTRKNFQSRCNGHLWLFDPMDGSFTHHIQNNWDVCNSNHVEISFIFSDESHDVSIFAESQPQPIIRECGIYFCEEETHIEDIRFSCTSGPEKPKLLITDGAAEGEMLKMKLTRKDER*	1080

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte5g01191	1079	Pfam	TIR domain	20	183	IPR000157	GO:0007165
	Pte5g01191	1079	SUPERFAMILY	Toll/Interleukin receptor TIR domain	15	163	IPR035897	-
	Pte5g01191	1079	SUPERFAMILY	L domain-like	547	902	-	-
	Pte5g01191	1079	Gene3D	-	188	352	IPR027417	-
	Pte5g01191	1079	Gene3D	-	18	187	IPR035897	-
	Pte5g01191	1079	SMART	till_3	20	160	IPR000157	GO:0007165
	Pte5g01191	1079	SUPERFAMILY	"Winged helix" DNA-binding domain	428	533	IPR036390	-
	Pte5g01191	1079	Gene3D	Ribonuclease Inhibitor	534	714	IPR032675	-
	Pte5g01191	1079	ProSiteProfiles	TIR domain profile.	19	185	IPR000157	GO:0007165
	Pte5g01191	1079	Gene3D	-	357	441	IPR042197	-
	Pte5g01191	1079	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	183	451	IPR027417	-
	Pte5g01191	1079	Gene3D	Ribonuclease Inhibitor	715	904	IPR032675	-
	Pte5g01191	1079	PRINTS	Disease resistance protein signature	221	236	-	-
	Pte5g01191	1079	PRINTS	Disease resistance protein signature	654	670	-	-
	Pte5g01191	1079	PRINTS	Disease resistance protein signature	392	406	-	-
	Pte5g01191	1079	PRINTS	Disease resistance protein signature	299	313	-	-
	Pte5g01191	1079	Pfam	NB-ARC domain	213	427	IPR002182	GO:0043531
	Pte5g01191	1079	FunFam	Disease resistance protein (TIR-NBS-LRR class)	17	187	-	-
	Pte5g01191	1079	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	21	770	IPR044974	GO:0006952

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte5g01191	Pte-Chr5	33520361	33531129	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte5g01191	21	784	WRKY Transcription Factor Family	AT4G12020	29.733	2.14e-86	305

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte5g01191	-		-	ccaj:109810288	882.093