Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01170 ATGGTATCACCAAAGACTCCTCCAGGACGTGCCTCTCTAATGGAAACCTTGCTTGGCCTTCTTAGAATCAGAGTGAAGCGTGGTGTCAACCTTGCTATTCGTGACGTTCGTAGCAGTGACCCTTACGTTATTGTTAAGATGGGCAAGCAGAAACTGAAGACTCGTGTGATAAAGAAAGATGTCAACCCTGAGTGGAATGAAGATCTTACTCTTTCAGTCACAGATCCCAATGTTCCAGTCCAGCTGAGTGTATTTGACCATGACACGTTCAGCAAGGATGACAAGATGGGAGATGCAGAGTTTGACATTAGACCCTACATAGAAGCTTTGAAGATGAACCTGGAAGACCTCCCAAGTGGCACAATCATCACAAGAGTACATCCAAACAGGGAAAACTGCCTTGCTGAAGAGAGTTGCATAACTTGGAACAATGGCAAAGTTGTTCAAGATATTTTTCTCAGATTGAAAAATGTGGAATGTGGTGAATTGGAAATCCAGCTGCAATGGATTGATCTTCCTGGTTCCAGGGGCTTATGA 537 0.4395 MVSPKTPPGRASLMETLLGLLRIRVKRGVNLAIRDVRSSDPYVIVKMGKQKLKTRVIKKDVNPEWNEDLTLSVTDPNVPVQLSVFDHDTFSKDDKMGDAEFDIRPYIEALKMNLEDLPSGTIITRVHPNRENCLAEESCITWNNGKVVQDIFLRLKNVECGELEIQLQWIDLPGSRGL* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01170 178 Gene3D C2 domain 15 176 IPR035892 -
Pte5g01170 178 Pfam C2 domain 19 105 IPR000008 -
Pte5g01170 178 ProSiteProfiles C2 domain profile. 1 116 IPR000008 -
Pte5g01170 178 SMART C2_3c 20 115 IPR000008 -
Pte5g01170 178 CDD C2_ArfGAP 18 161 - -
Pte5g01170 178 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 15 170 IPR035892 -
Pte5g01170 178 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 17 176 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01170 Pte-Chr5 33205642 33207566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01170 51 178 C2H2 Transcription Factor Family AT1G70790 61.538 2.89e-55 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01170 - - qsa:O6P43_005187 302.753