Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01165 ATGTCAAACCTCACGGGTGGTACTGACAGTGAGAGCTTCTCTTCTGAAAACATAAATGAAGGAGCTTTTCATAAGCGTCCGCATGCTGAGCTACTTAGCCACTTTCATAGCTCAAATTCTCCCACTACAACCAATAGCAATGGCTCCCACTCTTCACAACACCAACCTCATCCACCTCATAAGAAGAAAAGAAGCCTTCCAGGGACTCCAGATCCAACTGCTGAAGTGGTTGCTCTATCGCCAAACACCCTTATGGCTACAAACAGATTCGTGTGTGAGATTTGTCATAGAGGGTTTCAAAGGGACCAAAACCTCCAGCTACACAGGCGAGGACATAATTTGCCATGGAAGCTTAAGCAAAGACCAAGCACAGAGATTCGGAAGCGCGTTTATGTATGCCCAGAATCCTCATGCATCCACCACAATCAAGCGCGTGCATTAGGTGACCTCACTGGCATTAAGAAACACTTCAGCAGGAAACATGGAGAGAAGAAATGGAAATGTGACAAATGCTCCAAGAAATATGCAGTCCAGTCTGACTGGAAAGCCCACCTAAAGACATGTGGTACCAGAGAATACAAGTGTCATTGCGGCACCATTTTTTCCAGGTTAGTTTGA 618 0.4563 MSNLTGGTDSESFSSENINEGAFHKRPHAELLSHFHSSNSPTTTNSNGSHSSQHQPHPPHKKKRSLPGTPDPTAEVVALSPNTLMATNRFVCEICHRGFQRDQNLQLHRRGHNLPWKLKQRPSTEIRKRVYVCPESSCIHHNQARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHLKTCGTREYKCHCGTIFSRLV* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01165 205 MobiDBLite consensus disorder prediction 1 74 - -
Pte5g01165 205 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Pte5g01165 205 MobiDBLite consensus disorder prediction 33 54 - -
Pte5g01165 205 Pfam Zinc-finger of C2H2 type 90 112 - -
Pte5g01165 205 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Pte5g01165 205 Gene3D Classic Zinc Finger 125 204 - -
Pte5g01165 205 SUPERFAMILY beta-beta-alpha zinc fingers 89 186 IPR036236 -
Pte5g01165 205 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 40 203 IPR031140 -
Pte5g01165 205 FunFam protein indeterminate-domain 12-like 69 137 - -
Pte5g01165 205 MobiDBLite consensus disorder prediction 1 19 - -
Pte5g01165 205 SMART c2h2final6 166 186 IPR013087 -
Pte5g01165 205 SMART c2h2final6 90 112 IPR013087 -
Pte5g01165 205 SMART c2h2final6 131 161 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01165 Pte-Chr5 33141053 33142321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01165 39 203 IDZ Gene Family AT5G66730 73.214 6.95e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte5g01165 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01165 - - qsu:112003929 300.827