Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01154 ATGGATGAAACAAATATGCCTTCTGATGAAGTCATCACCAAAGTGGTCGAGATGGGTTTTCTGTATTCTGATGCGTTAGAAGCCGTAAATGCAGTTGGTCCAATAGTTGATGATGTATTAGAGTTTATCTTGGATCACTCTCGTAGAAGAAGTCATGCAGCTTCTACTAGTTCTAAATGTCTTGCAGGAAATGGTAAATTTTCGAGAAAAAGAGACTTGCCTTCTTCACATTCTTCCATTCAGTTGAGACAGTCAAGTCTACTGGATCATTATCGAACTGCTGAAAGAAACAAAGACATCAATACTAATATTGGTTTTGAAGCTCCAACCTTGAAGCTTAAATCTGGCCTAAATAATACAGATGAACAGAAAGTGAAGGGACCATTTCCAACCGTGGATCTTAATGTCAAAAAACCATCAGACTGTTACATTGTTGATTCTTCTGCAGATATGGATATAAAATCAGATTGGGAACAAAAACTTAGTTATGTATTGCAGAAGCATTTTGGTTTTTCGTCTTTGAAAGGTTTTCAAAGAGAAGCTTTGGATGCCTGGCTATCTCAAAAAGATTGTCTAGTACTGGCTGCAACAGGATCTGGAAAATCTCTATGTTTCCAGATTCCTGCATTGTTAACAGGGAATGTTGTTGTTGTAATCTCACCCTTAATCAGTCTGATGCATGATCAATGCTTAAAGCTATCTAGACATGGTGTTACTGCTTGCTTTCTGGGGTCTGGGCAACCGGATAGCTCTGTGGAGCAAAAAGCAATGAGAGGGATGTATAGTATAGTATATGTGTGCCCAGAGACAGTGCTACGACTGATCAAACCACTACAGAAGCTAGCAGAAATACGTGGAATTGCACTATTTGCAATAGATGAGGCACATTGTGTTTCTAAGTGGGGTCATGATTTTCGGCCAGACTACCGGCGACTGTCTGTGTTGAGAGAAAGTTTCAGTCAGAGCAATCTCAAGTCTCTTAAATTTGATGTGCCACTCATGGCTTTGACTGCTACGGCAACAATTCATGTCCAGGAAGACATTTTGAAGTCATTATGCATGTTGAAAGAAACAAAACTTGTCCTTACTTCCTTTTTTAGGCCTAATTTACGGTTCTCGGTAAAACATAGCAGAACGTCATCACCCGCTTCTTATGAAAAAGATTTTAGTGAGTTAATTGAAACATATGCAGGAAAGAAAGGGAAACTTCTCATAAAAAAGGGTACAGGAGATGATACTTGCAGTAGCTTTCATATCAGTAACATCTCTGAGGGAAGCATGACCTCACATGGTGGTCAGAAAGATACTGCATCCAGTTTCACGGAGGACGATGGTGATGTGTCTTCAAATGAGGGAGGTGATTTGGATACAGCAAAAGCAAAACAAATGTCAGTTGAATATCTGGAAAATGATACTGATGCCTTTAAAAGTGTTGATGACTGGGATGTTGCCTTTGGTGAATTCTTTCCACAATCTCCTGGCAAAGACCTGGTTGGCTCCTGGTCATCTGATGTCATTGGTCCACGAAATAAGCTAGCAGATAAAATCAGATTTCTCAAAGAGCCTTTAGAAGAAGGGCCAACCATTATATATGTTCCAACTAGGAAAGAGACGTTGAGGATTTCAAAGTATTTATGCAATGTTGGTGTGAAGGCTGCTGCTTATAATGCATCGCTCCCACGACTGCATCTGAGACGGGTTCACAAAGAGTTTCACGAAAATGATATACAGGTGGTTGTTGCAACAATTGCTTTTGGAATGGGAATTGACAAGTTAAACGTGAGAAGAATCATTCACTACGGTTGGCCACAGAGTTTGGAAGCATACTACCAAGAGGCTGGTCGAGCTGGCAGGGATGGGAGGCTAGCAGATTGCATTTTGTATGCAGACCTAACAAGAACTCCCTCACTCTTGCCTAGTCAGAGAAATGAAGATCAGAAAAAACAAGCATATAGGATGCTGGCCGATTGCTTCAGATACGGAATGAGCACATCATGCTGTCGAGCTAAAATGCTAGTTGAGTACTTCGGTGAAGACTTCAGTCATGAGAAGTGCCATGTGTGTGATGTGTGTGTTAATGGGCCACCTCTATTGCAGAATTTAAAGGAAGAGGTGGCTATATTTATTCAAGCTATTGCTGCCAAATATGATTGTAACAGTTCCCAGGACTGGTCAGACGTCGATGATAAAAGTTATAACATCAAACAGGAAAAAATCTTGGAGAAGCCAAGTCTAAAGATGCTTGTTAGTAGCATAAGGGAGAAGGTGATATAA 2274 0.405 MDETNMPSDEVITKVVEMGFLYSDALEAVNAVGPIVDDVLEFILDHSRRRSHAASTSSKCLAGNGKFSRKRDLPSSHSSIQLRQSSLLDHYRTAERNKDINTNIGFEAPTLKLKSGLNNTDEQKVKGPFPTVDLNVKKPSDCYIVDSSADMDIKSDWEQKLSYVLQKHFGFSSLKGFQREALDAWLSQKDCLVLAATGSGKSLCFQIPALLTGNVVVVISPLISLMHDQCLKLSRHGVTACFLGSGQPDSSVEQKAMRGMYSIVYVCPETVLRLIKPLQKLAEIRGIALFAIDEAHCVSKWGHDFRPDYRRLSVLRESFSQSNLKSLKFDVPLMALTATATIHVQEDILKSLCMLKETKLVLTSFFRPNLRFSVKHSRTSSPASYEKDFSELIETYAGKKGKLLIKKGTGDDTCSSFHISNISEGSMTSHGGQKDTASSFTEDDGDVSSNEGGDLDTAKAKQMSVEYLENDTDAFKSVDDWDVAFGEFFPQSPGKDLVGSWSSDVIGPRNKLADKIRFLKEPLEEGPTIIYVPTRKETLRISKYLCNVGVKAAAYNASLPRLHLRRVHKEFHENDIQVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGRLADCILYADLTRTPSLLPSQRNEDQKKQAYRMLADCFRYGMSTSCCRAKMLVEYFGEDFSHEKCHVCDVCVNGPPLLQNLKEEVAIFIQAIAAKYDCNSSQDWSDVDDKSYNIKQEKILEKPSLKMLVSSIREKVI* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01154 757 SMART ultradead3 170 375 IPR014001 -
Pte5g01154 757 FunFam ATP-dependent DNA helicase 504 629 - -
Pte5g01154 757 SMART helicmild6 539 620 IPR001650 -
Pte5g01154 757 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 511 658 IPR001650 -
Pte5g01154 757 MobiDBLite consensus disorder prediction 424 446 - -
Pte5g01154 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 630 IPR027417 -
Pte5g01154 757 MobiDBLite consensus disorder prediction 424 455 - -
Pte5g01154 757 CDD DEXHc_RecQ 164 365 - -
Pte5g01154 757 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 46 IPR015940 -
Pte5g01154 757 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 358 IPR014001 -
Pte5g01154 757 NCBIfam RecQ family ATP-dependent DNA helicase 164 401 IPR004589 GO:0004386|GO:0006310
Pte5g01154 757 PANTHER DNA HELICASE RECQ FAMILY MEMBER 149 719 - -
Pte5g01154 757 Gene3D - 138 366 IPR027417 -
Pte5g01154 757 Pfam Helicase conserved C-terminal domain 514 619 IPR001650 -
Pte5g01154 757 Gene3D - 502 629 IPR027417 -
Pte5g01154 757 Pfam DEAD/DEAH box helicase 177 343 IPR011545 GO:0003676|GO:0005524
Pte5g01154 757 Gene3D - 630 744 IPR036388 -
Pte5g01154 757 Pfam RecQ zinc-binding 629 691 IPR032284 -
Pte5g01154 757 FunFam ATP-dependent DNA helicase 145 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01154 Pte-Chr5 33100828 33106270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01154 515 620 Eukaryotic Initiation Factors Gene Family AT5G11170 27.358 3.41e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01154 K10900 - qsa:O6P43_011098 944.11