Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01148 ATGTCCATTATGTACATTACTATTTTTCCTGGGGATGCAGTGATCAGCCAAGTTTGGAAATATGATGCTCATGCTACCTTTTATGGTGACATGAAGGGTAACGAGACGATGCATGGAGCTTGCGGTTACGAAGATTTGTTCAAGCAAGGCTATGGACTTGAAACAGCAGCATTAAGCACTGATCTTTTTAAAAACGGATCGACGTGCGGTGCTTGTTTTGAAATAATGTGTGTGCACTCGAAGTGGTGCAAGCCAAGCGCTGCTCCAATCCATGTTACAACCACCAATTTCTGTCCTCCAAACTATACCAAAACACATGATATTTGGTGCAACCCACCTCAAAAGCATTTTGATCTTTCCCTGCCAATGTTTCTCAAAATTGCAGAATACAAAGCTGGGGGTTGTACCTGTTTCATTTTGAAGAGTGAGGTGTTTCAAGCGTGGTGGGATCCAATTTGA 459 0.4248 MSIMYITIFPGDAVISQVWKYDAHATFYGDMKGNETMHGACGYEDLFKQGYGLETAALSTDLFKNGSTCGACFEIMCVHSKWCKPSAAPIHVTTTNFCPPNYTKTHDIWCNPPQKHFDLSLPMFLKIAEYKAGGCTCFILKSEVFQAWWDPI* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01148 152 PRINTS Expansin signature 124 137 IPR002963 GO:0009664
Pte5g01148 152 PRINTS Expansin signature 76 87 IPR002963 GO:0009664
Pte5g01148 152 PRINTS Expansin signature 50 64 IPR002963 GO:0009664
Pte5g01148 152 PRINTS Expansin signature 90 100 IPR002963 GO:0009664
Pte5g01148 152 PRINTS Expansin signature 107 124 IPR002963 GO:0009664
Pte5g01148 152 CDD DPBB_EXPA_N 19 133 - -
Pte5g01148 152 Gene3D - 12 137 IPR036908 -
Pte5g01148 152 SUPERFAMILY Barwin-like endoglucanases 16 134 IPR036908 -
Pte5g01148 152 Pfam Lytic transglycolase 55 133 IPR009009 -
Pte5g01148 152 PRINTS Expansin/Lol pI family signature 19 34 IPR007118 GO:0005576
Pte5g01148 152 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Pte5g01148 152 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Pte5g01148 152 SMART dpbb_1 55 139 IPR007112 -
Pte5g01148 152 PANTHER EXPANSIN-A15 19 134 IPR002963 GO:0009664
Pte5g01148 152 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 152 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01148 Pte-Chr5 32989853 32990561 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01148 21 133 Expansin Gene Family AT5G39300 73.684 7.05e-58 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01148 - - pvy:116115632 202.216