Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01105 ATGTCTCCATCTTCCGACAGTTATGAAGAAGAACGTCTTTCCGACGACGAAGATGATCTCAACATAGAAGGATTAGATGACATACGGCGAGCTTGTATGCCGGAGGATACGGACGCCAATTATGAGCTTGCGGACCGAGAGTTGCTTCAGTCAATTGAACAGAAGTATTCCATTAAATTTAACGTGCCTCAGCCTCTGCATTTTTCGAAACATCTCAGTTCGCTTCCTCCTGCTGAGGTGGAGGAGGAGGAGGATTTCGAAACGCTACGTGCTATTAAGAAGCGTTTTAGAGCCTATGAAAAAGATAAAGGTAAGCTTACTGACAATCCCTTGAGGAAAGATGAGAGGATTCGCTCGTCAAAATTCTCAGCCTGCAGTATGGTGCCAACTCTGCCAAGTGACAGTCAAGATGCTGCGACGACGGTGGATGTGTGGGATGAGAATTTGGACAACCATCAAGCTCTCGATTCTTCAAGCTTGTCGAAAGCAAGATCACATTTTCCTGAAGCTGCTTGTTTTATTATTGATGCCATCAAGAAAAACAGGCTTAGTCAAAAGATTATCCGCTGCCAAATGGTTCAAATGGAAGGGAAAATTGAGGAGAACAAAGAGCTGACAAAACGTTTGGAGGCCCTTAAGGATTTCCAGACATTATGCAAGAAAAGAACGTCAAATGCATTATCCCTTAAGAAGGATCCTCGTGTCCTGCTAATATCTGTGAAAAAGGTCAACCTAAAAAAGGCATCTGTGATGCATTTTGGCCCAGAAGAGAATGCCCATGTTGCTAATTATAGTTCGGTGCGGGAGAACACTCCTCTTTCATTTGATAGAAAGATATGGTCAAAGGAAGAAAAGGAAAATCTTGAAAAGGGTGTAAGACAAGAATTTCAAGAAATATCGAATCGATATTCACTAAATATTTTCAATTCTGATGGATCATCTGGAGATAAAGACAATCTTGCATCCAGTAAATTTGAAATTACAACGTACCATAATAAAGAATTTCTGCCCAAGGTTGATTGGAATAAGTTGGCTTTCAAGTATGTTATGGGTCGTTCTGGTGCAGAATGTCAAGCAAGGTGGTTGAACTGTGAAGATCCTTCGATCAATCGAGACCTTTGGAGTAGCGAAGAGGATCAAAATCTTCTAAATTTAGTTGGAGAGAAGGGGCATAGAAACTGGTGTGATATCTCCGAATCATTGAACACAAATAGGACACCGTTTCAGTGTCTTCTGCGATACCAGAGGAGTTTAAACCCCTCCATATTAAACAGGGAATGGACCGAAGAAGAGGATGATAAACTTCGAGCTGCTGTAGAAAGGTTTGGTGAGAGGGATTGGCAGTCAGTAGCTTCTGCTGTAGAACATCGTACAGGTTCCCAATGCTCTAACAGATGGAAAAATTCTCTTCATCCAGAAAGGAAGGGAAGTTTTACACCGGATGAGGATAAACGCCTAAAAATAGCTGTAAGTTTTTTCGGACTGAAATGGAAGAAAATAGCTCAGTATTTACCTGGCCGCGTAGGAGCTCAATGCAGAGAGAGGTACGAAAGTTTATTTGAATGTATAAATTGGGAGGTACATATCGTCTTGAGATTACGTTATAATATTTTATCACGTACATGGAAGATATTTAAATAG 1641 0.4107 MSPSSDSYEEERLSDDEDDLNIEGLDDIRRACMPEDTDANYELADRELLQSIEQKYSIKFNVPQPLHFSKHLSSLPPAEVEEEEDFETLRAIKKRFRAYEKDKGKLTDNPLRKDERIRSSKFSACSMVPTLPSDSQDAATTVDVWDENLDNHQALDSSSLSKARSHFPEAACFIIDAIKKNRLSQKIIRCQMVQMEGKIEENKELTKRLEALKDFQTLCKKRTSNALSLKKDPRVLLISVKKVNLKKASVMHFGPEENAHVANYSSVRENTPLSFDRKIWSKEEKENLEKGVRQEFQEISNRYSLNIFNSDGSSGDKDNLASSKFEITTYHNKEFLPKVDWNKLAFKYVMGRSGAECQARWLNCEDPSINRDLWSSEEDQNLLNLVGEKGHRNWCDISESLNTNRTPFQCLLRYQRSLNPSILNREWTEEEDDKLRAAVERFGERDWQSVASAVEHRTGSQCSNRWKNSLHPERKGSFTPDEDKRLKIAVSFFGLKWKKIAQYLPGRVGAQCRERYESLFECINWEVHIVLRLRYNILSRTWKIFK* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01105 546 Gene3D - 425 472 - -
Pte5g01105 546 SUPERFAMILY Homeodomain-like 421 516 IPR009057 -
Pte5g01105 546 MobiDBLite consensus disorder prediction 1 20 - -
Pte5g01105 546 Gene3D - 274 371 - -
Pte5g01105 546 Gene3D - 473 523 - -
Pte5g01105 546 SMART sant 474 522 IPR001005 -
Pte5g01105 546 SMART sant 423 472 IPR001005 -
Pte5g01105 546 SMART sant 276 367 IPR001005 -
Pte5g01105 546 SMART sant 370 420 IPR001005 -
Pte5g01105 546 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 419 474 IPR017930 -
Pte5g01105 546 SUPERFAMILY Homeodomain-like 347 415 IPR009057 -
Pte5g01105 546 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 475 527 IPR017930 -
Pte5g01105 546 ProSiteProfiles Myb-like domain profile. 474 520 IPR001005 -
Pte5g01105 546 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 366 418 IPR017930 -
Pte5g01105 546 CDD SANT 477 520 IPR001005 -
Pte5g01105 546 Coils Coil 195 215 - -
Pte5g01105 546 ProSiteProfiles SANT domain profile. 422 462 IPR017884 -
Pte5g01105 546 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 14 516 - -
Pte5g01105 546 Gene3D - 372 423 - -
Pte5g01105 546 ProSiteProfiles Myb-like domain profile. 366 418 IPR001005 -
Pte5g01105 546 CDD SANT 374 418 IPR001005 -
Pte5g01105 546 Pfam Myb-like DNA-binding domain 427 475 - -
Pte5g01105 546 Pfam Myb-like DNA-binding domain 478 519 - -
Pte5g01105 546 Pfam Myb-like DNA-binding domain 374 422 - -
Pte5g01105 546 CDD SANT 426 470 IPR001005 -
Pte5g01105 546 ProSiteProfiles Myb-like domain profile. 419 470 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01105 Pte-Chr5 31738052 31742034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01105 120 528 MYB-Related Transcription Factor Family AT3G18100 44.651 8.60e-112 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte5g01105 Myb_DNA-bind_6 1.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01105 K09422 - qsa:O6P43_005158 513.457