Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01098 ATGTCAGAGGCAGAGCTCGATCTTGCGAAGAAAGTCGCTGATAGGTATCTGAAGCGCGAAGTTCTCGGTGAAGGTACTTTTGGAGTCGTATACAAAGCCATTGATACTCAGACAGGGCAGACGGTTGCCATTAAGAAAATTCGAATTGGGAAGCAGAATGAGGGGGTGAACGTTACAGCTCTAAGGGAAATTAAGCTGCTCAAAGAACTTAAGGACCCATATATTATCGAGCTAATTGATGCATTCCCACATAAGGGAAATTTACACCTCGTTTTTGAGTTCATGGAGACAGACCTTGAAACCATAATACGTGATCAAAATATAGTTCTTTCACCTGCAGATGTAAAATCGTATCTCCAGATGACACTAAAAGGGCTCGCAGTTTGCCACAGGAAATGGGTTTTGCACAGGGATATGAAGCCAAATAATTTGTTGATAGCATCTGATGGGCAGCTCAAACTTGCTGATTTTGGGTTAGCTCGGATATTTGGGAGTCCGAATTGCAGGCACACTCATCAGGTATTTGCCCGATGGTACAGAGCACCTGAGCTATTGTTTGGTTCCAAACAATATGGTGCAGGGGTGGATGTTTGGGCTGCAGGCTGTATATTTGCTGAGCTTCTACTTCGTCGACCATTTCTACAGGGAACCAGTGATATAGATCAATTAGGAAAAATCTTTCAAGCATTGGGGACCCCGACAGCTGCTCAATGGCCTGACATGGTTTACCTTCCCGACTATGTGGAATACCAATTTGTACAAGCTAGACCTCTAAGAACTTTATTTCCAATGGCAACTGATGATGCTTTGGACCTTTTGTCGAAGATGCTTGCGTATGACCCCAAAGCTAGAATTTCAGTACAGCAGGCGTTAGAACACAGGTACTTCACGTCTGCACCAGCACCTACTGATCCAGCTAAGCTTCGTAGACCTGCCTCTAAGCGGGAATCGAGGGCAGATTTTAATCCTAGTGAGGGACCTACTGTATTGTCACCTCCGAGGAAGTCCAGAAGAGTAATGCCAGATCGTGATAGTTTTCAAGGCAAGGCAAAATTTGCAGATAAAGTAGAAGACATTGTAATTAGTGGCAATACTGGGACTAGTGAATTGGCTCCAATGTCGGTAGATTTTTCTGTATTTGGCTTAAGACCTCCAAATAGGCCTACCATTAACAGCGCTGACAGATCACACCTCAAAAGGAAACTAGACCTAGAATTCTAG 1221 0.4406 MSEAELDLAKKVADRYLKREVLGEGTFGVVYKAIDTQTGQTVAIKKIRIGKQNEGVNVTALREIKLLKELKDPYIIELIDAFPHKGNLHLVFEFMETDLETIIRDQNIVLSPADVKSYLQMTLKGLAVCHRKWVLHRDMKPNNLLIASDGQLKLADFGLARIFGSPNCRHTHQVFARWYRAPELLFGSKQYGAGVDVWAAGCIFAELLLRRPFLQGTSDIDQLGKIFQALGTPTAAQWPDMVYLPDYVEYQFVQARPLRTLFPMATDDALDLLSKMLAYDPKARISVQQALEHRYFTSAPAPTDPAKLRRPASKRESRADFNPSEGPTVLSPPRKSRRVMPDRDSFQGKAKFADKVEDIVISGNTGTSELAPMSVDFSVFGLRPPNRPTINSADRSHLKRKLDLEF* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01098 406 SUPERFAMILY Protein kinase-like (PK-like) 11 303 IPR011009 -
Pte5g01098 406 Gene3D Transferase(Phosphotransferase) domain 1 97 312 - -
Pte5g01098 406 FunFam Cyclin-dependent kinase D-1 7 96 - -
Pte5g01098 406 Pfam Protein kinase domain 18 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte5g01098 406 ProSitePatterns Protein kinases ATP-binding region signature. 22 51 IPR017441 GO:0005524
Pte5g01098 406 ProSiteProfiles Protein kinase domain profile. 16 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte5g01098 406 Gene3D Phosphorylase Kinase; domain 1 6 96 - -
Pte5g01098 406 SMART serkin_6 16 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte5g01098 406 MobiDBLite consensus disorder prediction 296 344 - -
Pte5g01098 406 FunFam Putative cyclin-dependent kinase 7 97 312 - -
Pte5g01098 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Pte5g01098 406 PANTHER CELL DIVISION PROTEIN KINASE 14 300 - -
Pte5g01098 406 CDD STKc_CDK7 15 308 IPR037770 GO:0005675|GO:0008353|GO:0070985
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01098 Pte-Chr5 31552972 31557397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01098 10 406 Core Cell Cycle Gene Families AT1G18040 73.804 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Pte5g01098 Pkinase 3.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01098 K02202 - gmx:100776618 676.396