Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01086 ATGCTCCGAGGAAGTCTGCTTATGGGTGGGATTCTAGATTCACACGATCGGTTTAGGGAGTGGAGACTTGATGTTGATAACATGTCATATGAAGAGTTGCTGGAGCTAGGTGAGCGAATTGGTCATGTGAACACTGGGCTTAAAGAAGACGAAGTGTGGGGTTGCATTATGAAAGCTAAGCTTCCAAATCCAAATGATATATCAACCCACCAAGTTGATAGGAAATGCAGCATTTGCCAGGAAGATTATGAACCAGAAGATGAATTGGGGAAGCTAGTTTGTGGACATAGTTATCATATACAGTGTATAAGGAGATGGCTAGCACAGAAAAAATTGTGCCCTGTCTGTAAGGGAGAGGTTGGAGTGATGTGCCAAGGGAGAAAATGCAGTGAATCTAAATGA 402 0.4279 MLRGSLLMGGILDSHDRFREWRLDVDNMSYEELLELGERIGHVNTGLKEDEVWGCIMKAKLPNPNDISTHQVDRKCSICQEDYEPEDELGKLVCGHSYHIQCIRRWLAQKKLCPVCKGEVGVMCQGRKCSESK* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01086 133 SUPERFAMILY RING/U-box 75 123 - -
Pte5g01086 133 ProSiteProfiles Zinc finger RING-type profile. 76 117 IPR001841 -
Pte5g01086 133 SMART ring_2 76 116 IPR001841 -
Pte5g01086 133 Pfam Ring finger domain 75 117 IPR001841 -
Pte5g01086 133 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 119 IPR045191 GO:0061630
Pte5g01086 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 123 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01086 Pte-Chr5 31414169 31415791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01086 1 119 C3H Transcription Factor Family AT2G15530 50.413 9.90e-37 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01086 - - qsa:O6P43_005125 205.682