Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01070 ATGGTAATGTCTAGTTCAAAGAATATAAGCAGTTCTAGTGAAGATGACAGTGAGCTTAGAAGGGGGCCATGGACACTCGATGAGGATGAGCTGCTCATCAAATACATTGCAAATCATGGTGAAGGACGTTGGAATATGCTAGCAAAATGTTCAGGACTCAAGAGAACAGGAAAGAGTTGCAGATTGAGATGGCTAAATTATCTAAAACCAGATGTAAAGCGTGGAAATTTAAGCCCTCAAGAACAGCTTATCATTCTTGAACTACATTCAAAGTGGGGAAACAGGTGGTCAAGAATTGCTCAACATCTACCTGGTAGAACTGACAATGAAATCAAGAACTATTTTAGAACCAGGGTGCAGAAACAAGCAAAGCATCTAAATATTGACAGCAACAGTACAGAATTTCAAAACATTATCAGGCTTCTTTGGATGCCTTACTTGCTTCAGAAAGTTGAAGGATCTTTCTCTTCATCACTGGTGTTAGATCCAAACCAAGCGTTGATGCCAATGCCTTCAAATCACTATTCAGAATCTGCAGCACCACCACAAAATTCTTTGCAGGGACCTTGTAGCCCTTGTGTGTACGAGAGAGTTCTCAATTTTGATCAGCACGATCCACATTCCGATTTGGAGCACAACACCAGTTCATATGTGTCTACAGGATCAATGGCTACTAGCTCTCGCATGTCGGGAAATCCCACCATGCAAGTTCAGGCCATGTGTAACAGTGAAATCAGCACCATTCCAAATACCAAAACTTACAGCATGGACACATTCGACATAGATACTTCTACATCATCAGCTGATCGAGGTTTCGAATTCCCAGTTGGGGATTGCCAAGTGACTGAACGCATATGGATCAACGAGGACTTTACTGAATACCTTCAGAATATAGATGAGCTATGGCAAATTTAG 915 0.4142 MVMSSSKNISSSSEDDSELRRGPWTLDEDELLIKYIANHGEGRWNMLAKCSGLKRTGKSCRLRWLNYLKPDVKRGNLSPQEQLIILELHSKWGNRWSRIAQHLPGRTDNEIKNYFRTRVQKQAKHLNIDSNSTEFQNIIRLLWMPYLLQKVEGSFSSSLVLDPNQALMPMPSNHYSESAAPPQNSLQGPCSPCVYERVLNFDQHDPHSDLEHNTSSYVSTGSMATSSRMSGNPTMQVQAMCNSEISTIPNTKTYSMDTFDIDTSTSSADRGFEFPVGDCQVTERIWINEDFTEYLQNIDELWQI* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01070 304 SMART sant 20 70 IPR001005 -
Pte5g01070 304 SMART sant 73 121 IPR001005 -
Pte5g01070 304 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Pte5g01070 304 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Pte5g01070 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 123 IPR017930 -
Pte5g01070 304 CDD SANT 78 117 IPR001005 -
Pte5g01070 304 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Pte5g01070 304 Gene3D - 13 73 - -
Pte5g01070 304 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Pte5g01070 304 CDD SANT 23 68 IPR001005 -
Pte5g01070 304 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 16 213 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pte5g01070 304 MobiDBLite consensus disorder prediction 1 21 - -
Pte5g01070 304 Gene3D - 76 138 - -
Pte5g01070 304 SUPERFAMILY Homeodomain-like 19 115 IPR009057 -
Pte5g01070 304 FunFam Myb transcription factor 21 73 - -
Pte5g01070 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 72 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01070 Pte-Chr5 31231769 31232891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01070 16 158 MYB Transcription Factor Family AT1G68320 72.727 2.12e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte5g01070 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01070 K09422 - vvi:100242243 333.183