Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01053 ATGACTGAAACTAAGTCGGGCAGTAGGACAACTAAGAAACAGGATTCAAAGAAGACTTGTTCTAATTCCAGCAGTCAGCCGCCTCGGAAACAGCTTAGGAAGGGGGAAAACCCTTCCCGGCTCATGCCTGCTCCAGAGCAGTCTCCTGAGTTTGGAAGTTCAAACTCTTGGATTTGTAAAAATTCAGCTTGTCGAGCTGTTCTTTCTTTAGATGACACATTTTGTAAGAGGTGCTCATGCTGTATATGTCACTCGTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTGTGTAGTTCTGAATCACCAAAGCATGACTCTTGTGGGTTGTCTTGCCACATTGAATGTGCACAACAGCGCCAAAGGGTGGGGGTAGTTGATCATGGGCAATTGATGCAACTAGACGGGAGCTATTGTTGTGCATCTTGTGGAAAAGTAGCAGGGATACTTGGATGTTGGAAAAAACAGCTCTGCATAGCAAAGGATGCTAGGCGTTTGGACATTTTGTGCTACAGGATATACTTGAGCTACAGGCTTCTGGATGGCACATCGAGGTTTAAAGAACTGCATGAGATTGTAAAAGATGCCAAGGCTAAATTGGAAACAGAAGTTGGTCCGTTGGATGGAGTTTCTGCCAAGATGGCACGTGGCATCGTCAGCCGACTCTCCATTGCTGGTGAAGTGCAGAAACTATGCGCTCTTGCAATTGAGAAAGCTGACCAACGGATGACTAGCATTTATAGCAAGGGTTCAAGCTTTAGCGAGGGTTCGCTGCCTGCTGCCTGCAAGTTTGTTTTTGAGGAAGTAACATCTTCCTCTGTAACTATTATATTGATTGAAGCCTTGAATTCCTCATCTGAAAAAATTAACGGTTACAAGCTCTGGTATGACAAGAGTACAGATGAGATACCTACAAGAGATCCTGTTTGTGTCTTTCCAAGAGCTCAGAGGAGGATTTTGATATCCAATCTGCAGCCTTGTACAGAGTATACCTTCCAGATTGTATCTTATACTGATTCTGGAGACTTGGGGCACTCAGAGGCCAAGTGTTTCACAAAGAGTGTTGAGATCATTGGGAAGAAGCCCAATTCCTTGGCTTCTCTGCCGCATAAAGAAGAGAGTAATAATAAATCAGGCAGTCCTTCTAGTGCCAAATTAGTCTCTGGTCATGTAACCGCCGATGGTTCATCAGGATTCAAGGTTCGCGAACTTGCAAAGATTTTTCATCTTGCCTTGGCTCAACAGCATGGTTGCTTTGAAGGTTTCTGCAGTGCTGATACAAAGAAATGCTGTGAATGTAGCAGAAACATTAAACCTGAAACTCGGGAAGAGCGGTTGCCATCAGTTTCACGGGAACTTGACTTGAATGTTGTTTCAGTACCTGATTTGAATGAAGAGCTGACTCCACCATTTGAATTATCTAGGGATGAGGATAACGGTTGCTTGTTGCAGCAAACTGTTGAGGCAGATGATGATGATGATGTTTCTCATGAACTCGATAAGAATGGTCTATCAAGGTCGCATGGGAGTGGCGACTCCCAAACCTGGAACCGTGGGCCTACTGGAGATGTGCCAGCGGTTAATTCCCGGACAGACTTGTCTAGGAAAAGAGCTGCAAGTGTTAATGAAGAAACATTTGATTGTGATAGTACTTTGATAAATGGCTCACCCTTCCATATTCCAGATAGTTCATGTACCTTGGATGAGAACTTTGAGTACTGTGTGAAGACCATTCGTTGGCTAGAATGTGAGGGACACATCAACCAGGAATTTAGATTGAAATTACTAACATGGTTTAGTTTGAGATCAACAGAGCAAGAACGGAGAGTGGTTAACACCTTCATTCAAACTCTCATCGATGATCCTAGTAGCTTGGCAGGACAATTGGTTGACTCCTTTTCAGATATCATTTCCTGCAAGAAGCCGCGCAATGGATTCTGCAATAAACTGAGTCATTAA 1959 0.437 MTETKSGSRTTKKQDSKKTCSNSSSQPPRKQLRKGENPSRLMPAPEQSPEFGSSNSWICKNSACRAVLSLDDTFCKRCSCCICHSFDDNKDPSLWLVCSSESPKHDSCGLSCHIECAQQRQRVGVVDHGQLMQLDGSYCCASCGKVAGILGCWKKQLCIAKDARRLDILCYRIYLSYRLLDGTSRFKELHEIVKDAKAKLETEVGPLDGVSAKMARGIVSRLSIAGEVQKLCALAIEKADQRMTSIYSKGSSFSEGSLPAACKFVFEEVTSSSVTIILIEALNSSSEKINGYKLWYDKSTDEIPTRDPVCVFPRAQRRILISNLQPCTEYTFQIVSYTDSGDLGHSEAKCFTKSVEIIGKKPNSLASLPHKEESNNKSGSPSSAKLVSGHVTADGSSGFKVRELAKIFHLALAQQHGCFEGFCSADTKKCCECSRNIKPETREERLPSVSRELDLNVVSVPDLNEELTPPFELSRDEDNGCLLQQTVEADDDDDVSHELDKNGLSRSHGSGDSQTWNRGPTGDVPAVNSRTDLSRKRAASVNEETFDCDSTLINGSPFHIPDSSCTLDENFEYCVKTIRWLECEGHINQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISCKKPRNGFCNKLSH* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01053 652 Pfam Fibronectin type III domain 263 344 IPR003961 GO:0005515
Pte5g01053 652 PANTHER VIN3-LIKE PROTEIN 2-RELATED 5 652 IPR044514 GO:0010048|GO:0040029
Pte5g01053 652 Pfam PHD - plant homeodomain finger protein 59 177 IPR032881 -
Pte5g01053 652 MobiDBLite consensus disorder prediction 1 54 - -
Pte5g01053 652 MobiDBLite consensus disorder prediction 490 532 - -
Pte5g01053 652 CDD FN3 263 342 IPR003961 GO:0005515
Pte5g01053 652 SUPERFAMILY Fibronectin type III 264 342 IPR036116 GO:0005515
Pte5g01053 652 MobiDBLite consensus disorder prediction 365 386 - -
Pte5g01053 652 MobiDBLite consensus disorder prediction 368 386 - -
Pte5g01053 652 MobiDBLite consensus disorder prediction 17 32 - -
Pte5g01053 652 MobiDBLite consensus disorder prediction 1 16 - -
Pte5g01053 652 MobiDBLite consensus disorder prediction 506 528 - -
Pte5g01053 652 Gene3D Immunoglobulins 244 348 IPR013783 -
Pte5g01053 652 ProSiteProfiles Fibronectin type-III domain profile. 258 357 IPR003961 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01053 Pte-Chr5 31023851 31027201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01053 56 645 PHD Gene Family AT3G24440 48.684 3.12e-177 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01053 - - qsa:O6P43_007952 1008.44