Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01048 ATGAAGAATAAGGTCCATTTCCCTTACCCTCATTGTCCTCTCCTGCTTGTCATTGCCTTGTTTCTAGCCACTGTATCCCTTTGTGCAAGCCATGGTGGCGTGGGACTCTCAGATGCCGAAGCCTTGTATATCAGGCAAAGACAGCTTCTTTACTACAGAGACGAGTTTGGTGATAGAGGAGAGGATGTGACTGTAGACCCATCTCTTGTGTTTGAAAACGACCGTATCAGAAATGCTTATATAGCATTACAAGCGTGGAAAAAAGCCATTCTTTCCGATCCTCACAATTTCACTCGCAATTGGGTTGGACCTAAGGTCTGCAACTACACTGGGGTGTTCTGTGCTCCTGCACTTGACAACCCCAGAATCAACACAGTCGCTGGAATTGATCTCAATCATGGGGACATTGCTGGCTATTTGCCTGAGGAGCTGGGTTTGCTTGTAGATCTTGGTCTTTTTCACTTGAACTCCAACAGGTTCTGTGGTACTGTCCCTCACAAGTTTGACAAGCTCAAACTGCTGTTCGAATTGGATCTCAGCAACAACAGATTTGCTGGCAAGTTTCCGCAGGTTGTTTTGAGACTGCCAAAGTTGAAATTTTTGGATCTGAGGTTTAATGAATTCGAAGGTACAGTCCCTAGAGAGCTTTTCGACAAGGATCTGGATGCAATCTTCATCAACCACAACAGGTTTGTCTTCAATCTGCCAGACAATTTTGGAAATTCACCCGTGTCTGTTATTGTCCTCGCCAACAACAACTTCCATGGATGTGTACCTGCGAGCATAGGAAACATGTCTAGACTCAATGAAATCATACTAATGCATAATAAGCTCCGGTCGTGTTTGCCTCCGGAGATTGGGAGACTGAAGAACGTTACTGTGTTCGATGTGAGCTTCAATGAGCTCATGGGTCCTTTGCCTAACGAGATTGGAGGCATGGTGAGTCTTCAGCAGCTTGATGTGGCTCACAATATGCTTTCTGGGAGTATTCCTCAGAGCATTTGTAGGCTACCGAATCTGCAGAACTTCACATATTCGTATAACTTCTTCACTGGTGAGCCACCAGTTTGTCTGAACGTGCCGGCCTTTGATGATCGGAGTAACTGTTTGCCTGGCCGGCCTGTGCAGCGTTCACCTGCCCAATGTAATACATTCTTGTCTAGGCCTGTGGACTGTAGCTCATTCAGATGTGCTCCTTTTGTTCCTTCCATGCCTACTCCACCACCACCTTCACCTCCAATTCCGGTGCCGACACCGTCCCCTCCTCCTGTGACACCGCAACCTTCGTCGCCACCGCCTCCTGTTGTGACACCGCAGCCTTCTCCGCCCCCTCCGCCTGTTTCTCTCCCACCTCCACCACCACCTCCTCCACCACCAGTTTATTCGCCTCCTCCACCCCCACCTCCACCACCACCACCACCAGTTTATTCGCCTCCTCCACCCCCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCATCTCCTTCACCCCCACCACCACCAGTATATTCACCTCCACCTCCTCCACCACCTCCACCACCGCCGCCTCCTCCATCTCCTTCACCACCGCTGCCTCCACCTGCCTATATGCCACCTCCTCCATCACAGTCCCCGCCACCTCCATCAGTTACACCAACGCCCCCATATTGCGTGAGGTCTCCACCTCCGCCTCCAAATTCCCCACCACCTCCGCCATTGTTCTCCCCTCCCCCTCCCCCTCCCTCACCTTACTACTATAATTCACCACCTCCACCGTCACCGTCACCTCCGCCTCCACCACCACATTCACCACCTCCACCAATTTATCCATACTTGTCACCACCACCACCACCACCTGTCCATTCGCCACCTCCACCAGTATATTCACCGCCACCTCCACCCCCTTGTATAGAATATTCACCACCCCCACCCCCATCCCCTCCCCCACCTACACCAGCTCATCACTTACCACCACCTTCCCCATCACCTCCACCACCCCCAGCCGTGTATTCCTCGCCCCCTCCTCCGGTACACTACAATTCCCCTCCACCACCTCCTCCAGCAGTTCAATACAGTTCACCCCCACCTCCCCCAGTTCACTACAGCTCACCTCCCCCTCCTCCTCCACCAACTGTTCAGGAAAGCCCTCCTCCTGCCCCTGTATATGAAGGTCCTTTGCCACCAATCTTCGGAGTCTCGTATGCCTCTCCTCCCCCTCCTCCTTTCTATTGA 2211 0.5233 MKNKVHFPYPHCPLLLVIALFLATVSLCASHGGVGLSDAEALYIRQRQLLYYRDEFGDRGEDVTVDPSLVFENDRIRNAYIALQAWKKAILSDPHNFTRNWVGPKVCNYTGVFCAPALDNPRINTVAGIDLNHGDIAGYLPEELGLLVDLGLFHLNSNRFCGTVPHKFDKLKLLFELDLSNNRFAGKFPQVVLRLPKLKFLDLRFNEFEGTVPRELFDKDLDAIFINHNRFVFNLPDNFGNSPVSVIVLANNNFHGCVPASIGNMSRLNEIILMHNKLRSCLPPEIGRLKNVTVFDVSFNELMGPLPNEIGGMVSLQQLDVAHNMLSGSIPQSICRLPNLQNFTYSYNFFTGEPPVCLNVPAFDDRSNCLPGRPVQRSPAQCNTFLSRPVDCSSFRCAPFVPSMPTPPPPSPPIPVPTPSPPPVTPQPSSPPPPVVTPQPSPPPPPVSLPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPPPPSPSPPPPPVYSPPPPPPPPPPPPPPSPSPPLPPPAYMPPPPSQSPPPPSVTPTPPYCVRSPPPPPNSPPPPPLFSPPPPPPSPYYYNSPPPPSPSPPPPPPHSPPPPIYPYLSPPPPPPVHSPPPPVYSPPPPPPCIEYSPPPPPSPPPPTPAHHLPPPSPSPPPPPAVYSSPPPPVHYNSPPPPPPAVQYSSPPPPPVHYSSPPPPPPPTVQESPPPAPVYEGPLPPIFGVSYASPPPPPFY* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01048 736 FunFam Leucine-rich repeat extensin-like protein 5 242 381 - -
Pte5g01048 736 Gene3D Ribonuclease Inhibitor 242 365 IPR032675 -
Pte5g01048 736 MobiDBLite consensus disorder prediction 406 568 - -
Pte5g01048 736 PRINTS Proline rich extensin signature 447 468 - -
Pte5g01048 736 PRINTS Proline rich extensin signature 431 443 - -
Pte5g01048 736 PRINTS Proline rich extensin signature 405 421 - -
Pte5g01048 736 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 19 544 - -
Pte5g01048 736 Pfam Leucine rich repeat N-terminal domain 82 114 IPR013210 -
Pte5g01048 736 SUPERFAMILY L domain-like 81 361 - -
Pte5g01048 736 SMART LRR_typ_2 313 337 IPR003591 -
Pte5g01048 736 SMART LRR_typ_2 265 289 IPR003591 -
Pte5g01048 736 SMART LRR_typ_2 195 219 IPR003591 -
Pte5g01048 736 MobiDBLite consensus disorder prediction 632 723 - -
Pte5g01048 736 FunFam Leucine-rich repeat extensin-like protein 1 80 241 - -
Pte5g01048 736 Gene3D Ribonuclease Inhibitor 80 241 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01048 Pte-Chr5 30966265 30968846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01048 14 398 Trihelix Transcription Factor Family AT4G18670 73.643 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01048 - - qsa:O6P43_007947 657.907