Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01013 ATGAAAGACTGTTTTTATTCTCTAACTCAACACTTCAAGGAAGACCCTCAGAATTTGTCTTGGCCTACTGCCTCCACCACCATGACAGTTACTTCGGACCAAATCCTCCGCCGCACCACCGACTTCATCATGGAAACCCTTTCAAATTCCGAGCTACGCCAGCGCCTCATCTCCACTCTCTACGGTGAAGCCTCGTTCTCAGACCAAATCACCCTTAAAGCCCTCAGTCTTGCAGCTGAAACTGTACAAAATGCTATTGAAACATCTAACACCAATGTTCGTTCATCTTCTCTACGTTTCACCGAGAAGAGACTTCGAGCTCTCCCTGAAAACCCCTTTTCTTCTTTCTTACTCTCATTCATTTACAGCCTCTGGGCTAGGCCAGTTGATGCTGCCATTAATTTGCTTCAAGTTTTTCACTCTAGTCCTTCATTGGCCCGGTCAGAAATTGCCCCTGTTCTGTTCGAAGACTTGTTTTCAGTTAACTTCTATCCTGTTTTTGAATGGTTTAACGAACAAAGAGCTGAAATTTTGTCACAGAATTTGGGACATAACGGAAGTGACTTTTCAATTGGTGACGAGTCCAGTGTAGTTCCGAGTTCCAAATCATTGTCAAAGATGAGTGGAGATCAAGCATTGGAGCTGAGGAAGCTTGAGAGAGACTATGAGCAGGTTCTTGATCAGAATTGCAGCATTTTCGCCAAGTACTTTGCAGAGGTTTTGGAGAACGAAAATGAGGACAAGTCTAGTAGTCCACCATTGCTTATATTGAAAAATAGCAGCCAACATGATAGAGTACTCGAGAATATTCAGATGGAGGAAAGTGAAAGAGAAGAACTGCCCTTGAAGAATGGACGGTATAATCCAATATGGGCTGGATCGGACAACTCCATCGAGTTTCTTGGAAGCGGTACTTCTAACAGCAAAACCAGGCATCCGGAAATTTATCCTCAAAGAGTCTCTCCAAGACTCTTCAGATCAGCAAAGTCTCCTCAGCATTCGATAGAATCAAGGAATAGGCCTTCACCGATGACATCAAAGAATATCAAGTTCTCGATGGTCCCAAAGGATCTGAATTCAGATTATGATTATGAAACGTCTTTGGATGACAACTTGGCTAGTAATTCTTCTTCTTTCGAATATGAAGTACAAACCAAGGTAATTGATACTAACAATAGAAGGCAAAGAAAAAACAAAATAGATTATATCATGGCAGATTATGATAACCCACCCGGAAGTGGAAAGCATACACCCCCCAAGGATTTTGTTTGTCCAATAACCAGTAATATATTTGATGATCCAGTGACTCTTGAGACTGGTCAAACATATGAGCGCAAAGCAATTCAAGAATGGTTTTGTAGAGGAAATGCCACATGCCCCATTACAAGGCAGAAGCTGCACAGCACTCAATTACCCAAGACAAACTATGTGTTAAAAAGGCTTATAGCTAGCTGGCAAGAGCAGAATCCAAAAGCAGCCGCTTTACAATCTGAGAGTGCATATCGTGAGACCGAACCAATCATCCAGATGCCGTCAACTTCGCCAAATAGTGTTATCATGCAGGCAAGTACTGATAGAATGATCAGTGAGTTAAGGCATGCAGTTAATAACCTTTATATGTCAGAGGTCTTAGAGGAATCTGAAAAGGCGGTTATTAAAATTGAGCAGTTCTGGAAAGAAATAGATCTTGGAGTGGACATGCAGAATATGCTATCAAAGCCTCCAGTTATTAACGGCTTCATGGAGATCCTTTTCAATTCAGTTGATACCAAGGTGCTGCAGGCAACGGTTTTTCTAATGATTGAATTGGTATATAGAGACAGAGCAGTGATTCAAACACTCACTCAGGTGGACTCTGATGTGGAGTGCATTGTTGCTCTTTTCAAGAAAGGACTGATGGAGGCCATCGTGTTGTTATATTTTCTAAGGCCTACCTCGGACAACCTTCTTGACATGGAAATCTTAGAGACTCTGGTTGAAGTTATTAAGATGACAGATGAGGAGTTCAAAAAATTATGTATGAAGCCTAAAACAGCTTCGTTGCTATTATTAGCCCAGATTTTTGGAGACAGCGACGAGAGAATTGTTGCTTCAGCAGTGAAAACAATCTTCTCTCGAAGAGCAATTGAGAATATTGTGGGCAGTCTGGAAGCTGATTGGACTGAGGAGAGAATTTCTGCAGTTCGAATTTTGTTGAGATGCATAAATGAGGATGGAAGATGCAGATATATAATTGCTGACAAAGCTGTGCTAATTCCTGTTTTAGACAGCTTCATTTGTCAGACTGATAGAGATCCTTATGAAATTGTCCAATTTTTCTATGAGCTCGTCAAATTGAATAGAAGGACACTAAATGAACAAGTTCTGCACATTATAAAGGAAGAAGGTGCATTCAGTACGATGCATACACTTCTGATTTATTTGCAGACAGCCGTTCCAGACAAATGTCCAACTGTAGCTGGTCTTCTCCTCCAGCTTGATCTTCTGATGGATCCAAGAAAAATGAGCGTATATCGTGAAGAGGCAATGGATTCTCTAATTTCATGCCTTAGGAATAATGAGTTCCCAGATGCACAAGTAGCTGCTGCAGAGACTATCATCTCATTGCAAGGAAGATTCACAGTCTCAGGAAAGCCTCTAACAAGGGCAATCCTCCTTAAACGTGCAGGCATGGACAGAAGTTACAAGAACCTTGTAAAAATGGATGACTATGGCAGCTCTGGCGGAGTGCTGGAAATATCAAATGAAGAAGAAAAGGCTGCAGATGACTGGGAAAAGAAAATGGTGTCTGTTTTAGCATGCCATGAATTTGGTCTAATTTTTGAAGCCTTAGCTGAAGGACTGAAATCTCGGCATGCAGACCTACGTTCACTATGCTATATATCAGCAACATGGCTCATCAACATGCTAGCAGTTCTTCCTGACACAGGAGTACAAGGAGCAGCTAGAGTCTGCTTGCTTAAGCGCTTCATATCTGTATTCGTATCTTCAAAGGACCCTGAAGACAAAGCTCTTTCCATGCTTGCTATTAAGAGCTTTATCAGTAGCCCTGAGGGCCTACGAGATATAACTTCCTACACTAAGGATATCTTGAAAGGACTGAGGGAGTTAAAGAAATCCTCTCGCTTGGCATCTGAACTACTGAAAGTTCTATCCGAAGGGAATGAAGCCAGTGCAGATCTCTGGAATCACAAAGAACTAGCCCATGTCAACTGCAATGAGAATGGAGAAATTTTGTCAGTTGTTTGCTGCAAAGATAAAGTATTTTCGGGCCATTCAGATGGAACTATAAAGGTCTGGACTGTAAAGGGAAGTGTACTTCATCTCTTGCAAGATATTCGAGAACATGCAAAAGCTGTTACAAGTTTGGCAATTGCAGCTTCAGGGGAGACTCTATATAGTGGTTCTATGGATCGTACTGTAAAGGCGTGGTCAGTTGGAAAGGAATCAATGCATTGTGAACAAGTTTATGATATGAAGGACCAAGTTCACAATTTAGTAGTGGCCAACAGCATAGCTTGCTTCATTCCACAAAGCACTGGAGTTAAGGTCCAATCATGGAATGGAGGATCAAAATTGCTGAATACAAACAAGTATGTCAAGTCTTTGGCACTTCTGCAAGGGAAACTGTACTGTGGGTGCTATGATAACAGTGTTCAGGAAATTGATTTGTCCTCGGAAACAATCTGTACCATCCAAAGTGGATCCAGAAAATTAATTGGAAAATCCAATCCTATTCATGCCCTGCAAGTTTGTGATGGAATATTATATGCAGCTGGCACTTTCTTGGATGGAGCTGCTGTCAAGATGTGGAGCACTTCAAATTACAACACAATTGGAACGCTGCCAACTGCTTCAGAAGTACGTAGCATGACATTGAGCACAGAGTTAACTTATTTAGGCTGCAAGGGTGGAGTAGTGGAGATTTGGGACAGGAAGAAACATAGCATGGTGGACACACTACAGACAGGCACAAATGGCAGGGTTCTTTGCATGGCTGTCGATGCAAATGAGGAAATTTTAGTCATCGGAACTTCTGATGGCAGGATTCAGGCATGGGAAATAAACTAG 4071 0.4176 MKDCFYSLTQHFKEDPQNLSWPTASTTMTVTSDQILRRTTDFIMETLSNSELRQRLISTLYGEASFSDQITLKALSLAAETVQNAIETSNTNVRSSSLRFTEKRLRALPENPFSSFLLSFIYSLWARPVDAAINLLQVFHSSPSLARSEIAPVLFEDLFSVNFYPVFEWFNEQRAEILSQNLGHNGSDFSIGDESSVVPSSKSLSKMSGDQALELRKLERDYEQVLDQNCSIFAKYFAEVLENENEDKSSSPPLLILKNSSQHDRVLENIQMEESEREELPLKNGRYNPIWAGSDNSIEFLGSGTSNSKTRHPEIYPQRVSPRLFRSAKSPQHSIESRNRPSPMTSKNIKFSMVPKDLNSDYDYETSLDDNLASNSSSFEYEVQTKVIDTNNRRQRKNKIDYIMADYDNPPGSGKHTPPKDFVCPITSNIFDDPVTLETGQTYERKAIQEWFCRGNATCPITRQKLHSTQLPKTNYVLKRLIASWQEQNPKAAALQSESAYRETEPIIQMPSTSPNSVIMQASTDRMISELRHAVNNLYMSEVLEESEKAVIKIEQFWKEIDLGVDMQNMLSKPPVINGFMEILFNSVDTKVLQATVFLMIELVYRDRAVIQTLTQVDSDVECIVALFKKGLMEAIVLLYFLRPTSDNLLDMEILETLVEVIKMTDEEFKKLCMKPKTASLLLLAQIFGDSDERIVASAVKTIFSRRAIENIVGSLEADWTEERISAVRILLRCINEDGRCRYIIADKAVLIPVLDSFICQTDRDPYEIVQFFYELVKLNRRTLNEQVLHIIKEEGAFSTMHTLLIYLQTAVPDKCPTVAGLLLQLDLLMDPRKMSVYREEAMDSLISCLRNNEFPDAQVAAAETIISLQGRFTVSGKPLTRAILLKRAGMDRSYKNLVKMDDYGSSGGVLEISNEEEKAADDWEKKMVSVLACHEFGLIFEALAEGLKSRHADLRSLCYISATWLINMLAVLPDTGVQGAARVCLLKRFISVFVSSKDPEDKALSMLAIKSFISSPEGLRDITSYTKDILKGLRELKKSSRLASELLKVLSEGNEASADLWNHKELAHVNCNENGEILSVVCCKDKVFSGHSDGTIKVWTVKGSVLHLLQDIREHAKAVTSLAIAASGETLYSGSMDRTVKAWSVGKESMHCEQVYDMKDQVHNLVVANSIACFIPQSTGVKVQSWNGGSKLLNTNKYVKSLALLQGKLYCGCYDNSVQEIDLSSETICTIQSGSRKLIGKSNPIHALQVCDGILYAAGTFLDGAAVKMWSTSNYNTIGTLPTASEVRSMTLSTELTYLGCKGGVVEIWDRKKHSMVDTLQTGTNGRVLCMAVDANEEILVIGTSDGRIQAWEIN* 1357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01013 1356 Gene3D - 1050 1169 IPR015943 GO:0005515
Pte5g01013 1356 ProSiteProfiles Trp-Asp (WD) repeats profile. 1113 1146 IPR001680 GO:0005515
Pte5g01013 1356 CDD RING-Ubox_PUB 419 471 IPR045210 -
Pte5g01013 1356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 405 505 IPR013083 -
Pte5g01013 1356 Pfam WD domain, G-beta repeat 1110 1145 IPR001680 GO:0005515
Pte5g01013 1356 SMART Ubox_2 421 485 IPR003613 GO:0004842|GO:0016567
Pte5g01013 1356 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1322 1356 - -
Pte5g01013 1356 ProSiteProfiles Trp-Asp (WD) repeats profile. 1322 1356 IPR001680 GO:0005515
Pte5g01013 1356 MobiDBLite consensus disorder prediction 326 348 - -
Pte5g01013 1356 SUPERFAMILY RING/U-box 413 490 - -
Pte5g01013 1356 SUPERFAMILY ARM repeat 533 869 IPR016024 -
Pte5g01013 1356 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 27 1355 - -
Pte5g01013 1356 SMART WD40_4 1275 1311 IPR001680 GO:0005515
Pte5g01013 1356 SMART WD40_4 1180 1223 IPR001680 GO:0005515
Pte5g01013 1356 SMART WD40_4 1106 1145 IPR001680 GO:0005515
Pte5g01013 1356 SMART WD40_4 1314 1354 IPR001680 GO:0005515
Pte5g01013 1356 SMART WD40_4 1063 1101 IPR001680 GO:0005515
Pte5g01013 1356 Pfam U-box domain 419 489 IPR003613 GO:0004842|GO:0016567
Pte5g01013 1356 SUPERFAMILY WD40 repeat-like 1067 1352 IPR036322 GO:0005515
Pte5g01013 1356 ProSitePatterns Trp-Asp (WD) repeats signature. 1341 1355 IPR019775 -
Pte5g01013 1356 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1113 1146 - -
Pte5g01013 1356 Gene3D - 1170 1356 IPR015943 GO:0005515
Pte5g01013 1356 ProSiteProfiles U-box domain profile. 417 492 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01013 Pte-Chr5 29893928 29900857 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01013 419 540 U-box Gene Family AT5G42340 36.885 8.51e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01013 - - qsa:O6P43_004004 1687.93