Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01002 ATGCATCACGACCTTACCAAGCTGTCTACCTCACTTGATTTCCTTAGACTTTGGCAATACCAATACAGTACCATGTTCCTTAGCGCTCTTCCATTCTCACAAGTGAATGGTACAGTGAGTCCTGGTCACTCACTCACGCCCTGTTTTCACATTCACATCACCAAGTATCGGACTCCCACTGACCCTCCAACCAGAAGCCATATATTAACAATCATGAAATCTCAAGAGGGTCTCAAGTTCATTGGGCAAAATCCCAAGTGGGGTTTTGGTAAAGAAGTATCAGCAACAGAGTATTGGACAGAAGCTGTAGCTCCTAGGCGCAAATGGAAGATTTTCAATAGGTCATCTTCAGCTCTACCTTTCAAGCCTCAAACTAAGCCAAAGGCACCACCAAAGGAGTTTCTTTGTCCCTTGTCTGGGTCTATCATGGCTGATCCTGTGATTGTCTCATCAGGTCATACCTTTGAGAAAAACTCTGTTCAAGCCTGCAAAAACTTAGGTTTCGCGCCGACAATCAACGGAGGCTACACACCTGATTTGTCTACCTTAATCCCCAACCTTGCTCTCAAATCTGCCATAGTCAATTGGTGCAAGGCCTCTTCCATTGACCCACCCAACCCTCCGGATTCCAATTCTGCTGAGAAACTCGTCCGTACGCTTATGACTCAGAAGAGTCAGAATGCCAACCAAAATGGAGGTGAACCGCAGACGGGACTAAGCTTTGGATCTGAAAGGCAACTTATTGAAGCTGCTAAAGAAAACCCACCTGTGAATTTCACTCACGCAGCCACAGAAGTAACCCCTCGAAGGAATCATTCCTATACTAGCTCAGAAGAATCAGTAGGTACCTCTGTTTCGACGCCTCCTCTGCAACTATCAACTAGTCCCAGTTGCTATTCTTCTCCATCATCCTCTGAGATTGAGACGATGGATTCTATGTCACCTGAACAAGAAGAAATCTTGTCGAAACTGAAAAGCCCACAGGTGTTTGAGGTCGAAGAAGCTGTGGTTTCACTGAGAAAGCTTACAAAGACTAGAGAGGAAACTAGAGCTCAACTCTGTACGCCTAGGTTACTCTCAGCCCTACGTCCTCTGATCCGTTCCAAGTATACAGCCATTCAGGTGAACTCAGTCGCAGCTCTGGTGAATCTATCATTGGATAAGGTGAACAAGAACAAAATCGTACGGTCAGGAGTGGTTCCTCCATTGATTTATGTGTTGAGAGATGGATACCCTCAGTCACAGGAACACGCTTGTGGTGCACTTTTCAGCTTAGCCCTTGACGATGACAGCAAGACCGCAATTGGGGTATTGGGAGCTTTGCCGCCGTTGATTCATTTGCTACGATCCGATTGTGAGCGGACTCGGCATGACTCGGCACTCGCCCTATATCATCTTTCCCTGGTTCAAAGCAACCAGACCAAGTTGACCAAACTCGGATCGGTTCCTCTTCTAATGGACATGGTGAAGTCGTATCACATGACGGGTCGGATTCTGCTCATTTTGGGCAACTTAGCTGCGGGTGTGGAGGGACGTTCTGCATTGTTGGATGCGGGTGCAGTGGAGCACTTGGTCCGGTTATCAGACGAGAAAGAGCCCGTGTCTGGGTCAACCCGTGAGAGCTGTGTTGCAGTGTTGTATGCACTGAGTCGTGGTGGATTGAGATTCAAGGCACTGGCCATGGCGGCCAGAGCGGTGAAGGTGTTGAGGAAGGTTGAGAAAGTAGGAAGTGAAAGATCAAGTGAGAAGGTGAGAGGGATATTGGAGGTGATGAAAGCCAGAGATGAAGAGGAAGCAGAAATCGACTGGGAGGAAATTCTTGACTTGGGATTCAGGAGTCATACTCGGGATGAGTCTCGTGCTCACTCGTCCGAGTTTTGA 1881 0.4769 MHHDLTKLSTSLDFLRLWQYQYSTMFLSALPFSQVNGTVSPGHSLTPCFHIHITKYRTPTDPPTRSHILTIMKSQEGLKFIGQNPKWGFGKEVSATEYWTEAVAPRRKWKIFNRSSSALPFKPQTKPKAPPKEFLCPLSGSIMADPVIVSSGHTFEKNSVQACKNLGFAPTINGGYTPDLSTLIPNLALKSAIVNWCKASSIDPPNPPDSNSAEKLVRTLMTQKSQNANQNGGEPQTGLSFGSERQLIEAAKENPPVNFTHAATEVTPRRNHSYTSSEESVGTSVSTPPLQLSTSPSCYSSPSSSEIETMDSMSPEQEEILSKLKSPQVFEVEEAVVSLRKLTKTREETRAQLCTPRLLSALRPLIRSKYTAIQVNSVAALVNLSLDKVNKNKIVRSGVVPPLIYVLRDGYPQSQEHACGALFSLALDDDSKTAIGVLGALPPLIHLLRSDCERTRHDSALALYHLSLVQSNQTKLTKLGSVPLLMDMVKSYHMTGRILLILGNLAAGVEGRSALLDAGAVEHLVRLSDEKEPVSGSTRESCVAVLYALSRGGLRFKALAMAARAVKVLRKVEKVGSERSSEKVRGILEVMKARDEEEAEIDWEEILDLGFRSHTRDESRAHSSEF* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01002 626 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 357 399 IPR000225 GO:0005515
Pte5g01002 626 PANTHER U BOX DOMAIN-CONTAINING 112 594 - -
Pte5g01002 626 SUPERFAMILY ARM repeat 318 573 IPR016024 -
Pte5g01002 626 Pfam Armadillo/beta-catenin-like repeat 389 426 IPR000225 GO:0005515
Pte5g01002 626 Pfam Armadillo/beta-catenin-like repeat 429 467 IPR000225 GO:0005515
Pte5g01002 626 Gene3D - 311 590 IPR011989 -
Pte5g01002 626 ProSiteProfiles U-box domain profile. 129 203 IPR003613 GO:0004842|GO:0016567
Pte5g01002 626 MobiDBLite consensus disorder prediction 262 309 - -
Pte5g01002 626 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 439 481 IPR000225 GO:0005515
Pte5g01002 626 Pfam U-box domain 131 200 IPR003613 GO:0004842|GO:0016567
Pte5g01002 626 SUPERFAMILY RING/U-box 128 206 - -
Pte5g01002 626 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 202 IPR013083 -
Pte5g01002 626 SMART Ubox_2 133 196 IPR003613 GO:0004842|GO:0016567
Pte5g01002 626 SMART arm_5 428 468 IPR000225 GO:0005515
Pte5g01002 626 SMART arm_5 469 507 IPR000225 GO:0005515
Pte5g01002 626 SMART arm_5 387 427 IPR000225 GO:0005515
Pte5g01002 626 SMART arm_5 346 386 IPR000225 GO:0005515
Pte5g01002 626 SMART arm_5 508 551 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01002 Pte-Chr5 29679476 29681783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01002 101 627 U-box Gene Family AT5G40140 51.571 4.67e-170 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01002 - - qsa:O6P43_004571 664.84