Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g01000 ATGGAGATGGAGGAGATTCAAGGGCAAGCATGTAATTTCCCAAGAGTTGGAAACAGCATAAATGAGTCTTCCAAGATAGGATCAAACGGGGGTACTGAACGCTTCGTCCCTGGTGATGAAGAAGATGGCGAGCTTAAAAGGGTTGGTGGAGTTGTCGATTGTGGACCTAATAGGCTTCGTGGTTGGCACCATTCTTCAAGAATCATTAGGGTTTCACGAGCTTCTGGTGGCAAAGATCGACACAGTAAGGTATGGACTTCAAAGGGTCTAAGAGACAGAAGGGTTAGGCTGTCTGTAACTACAGCTATTCAGTTCTATGATCTTCAAGATCGGCTTGGTTATGACCAACCAAGTAAAGCTGTGGAGTGGCTTATTAAAAAAGCTGCTGATGCCATCGCTGAGCTTCCTTCTCTCAACCATCCATTTCCGGATTCACCAAATCAACAAAGTGATGAGAAAAGAGGTACTGCTGAAACTGAACAGCGGTTTGATTCAGCTGATGTTGAGCTGGATGGTGAACCAAATTACCAACAGAACCAAAGCCAGCACCTTTCATTGTCCAAGTCTGCTTGTAGTAGCACTTCAGAGAACAGCAAAGGTTCAAATATGTCCCTCTCAAAGCCTGACAGTCGCGTGCAGCGTGTCAAGGCGCGCGAGCGAGCAAGGGAAAGAACAGCTAAAGAGAAGGAGAAAGAGAAGGATTCTCGCATTGCTCACCATCAAAACGTGAACCCCATTTCTCAAAATGCTTCCTTTACGGAGTTACTCACTTGTGGAATTGGCAATGTGAATAACATTAATAATGCAACAGGCACTGCAGCTAGTACTAGTCCCAGTAGTTCTATTCAACAAAACCAGCCTGGTGAGCACGAGGCTAATTTGTTTCACAAAGCTGCAAGACAATGGCCTTCAGCACCACTAGATTACTTCACCTCTGGTCTATTAGGGCCATCCTCTTCAAGAACCCATCAGTCTTCTGGGTTCTCTGGATTGGGAAATCCACTTGCTCAAACATTGTCGGTCTCACCCTATAATGTAAATGCTGCTGAGAACCAATCAGATCAGCTACAGCATTTCTCTTTGGTTCCAGACCATCTAATACCCGTTGTATCTTCACAACCCAGTGGAGGCGAGTACAATCTCAACTTCTCAATCTCTTCGTCAGGCCTCGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCTCCACCTTTCTTGCCTCATGTCCAGAGGTTTCCACCGGTAGATGGATCCAATGTGCCCTTTTACATTGGAACTGCTGCTCCATCCGTAGACAACAATCACCATCCTCAGTTCCCACCTGGATTTGATGGCCGCTTGCAGCTCTACTATGGCGATGGAGGTGGCCGCCATTCAGACGAGAAGGGCAAAGGAAAGAACTGA 1404 0.4651 MEMEEIQGQACNFPRVGNSINESSKIGSNGGTERFVPGDEEDGELKRVGGVVDCGPNRLRGWHHSSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKKAADAIAELPSLNHPFPDSPNQQSDEKRGTAETEQRFDSADVELDGEPNYQQNQSQHLSLSKSACSSTSENSKGSNMSLSKPDSRVQRVKARERARERTAKEKEKEKDSRIAHHQNVNPISQNASFTELLTCGIGNVNNINNATGTAASTSPSSSIQQNQPGEHEANLFHKAARQWPSAPLDYFTSGLLGPSSSRTHQSSGFSGLGNPLAQTLSVSPYNVNAAENQSDQLQHFSLVPDHLIPVVSSQPSGGEYNLNFSISSSGLAGFNRGTLQSNSPPFLPHVQRFPPVDGSNVPFYIGTAAPSVDNNHHPQFPPGFDGRLQLYYGDGGGRHSDEKGKGKN* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g01000 467 MobiDBLite consensus disorder prediction 1 36 - -
Pte5g01000 467 MobiDBLite consensus disorder prediction 151 169 - -
Pte5g01000 467 MobiDBLite consensus disorder prediction 172 209 - -
Pte5g01000 467 MobiDBLite consensus disorder prediction 12 30 - -
Pte5g01000 467 ProSiteProfiles TCP domain profile. 77 135 IPR017887 -
Pte5g01000 467 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 52 344 IPR005333 GO:0003700
Pte5g01000 467 MobiDBLite consensus disorder prediction 211 239 - -
Pte5g01000 467 ProSiteProfiles R domain profile. 211 229 IPR017888 -
Pte5g01000 467 MobiDBLite consensus disorder prediction 433 467 - -
Pte5g01000 467 MobiDBLite consensus disorder prediction 136 245 - -
Pte5g01000 467 Pfam TCP family transcription factor 76 231 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g01000 Pte-Chr5 29604133 29610351 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g01000 57 468 TCP Transcription Factor Family AT4G18390 43.379 1.76e-79 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pte5g01000 TCP 4.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g01000 - - tcc:18596471 554.673