Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00979 ATGGCGGAGCCATCAAACTCAGAGAACGATATCAGTGCAAACTGGTGTTCATCTTCATCCCCCTCTTACTGCTCACACTCTATTTTTCCTCCTTCACCGTCGTTCTCTTCTGGGTCTGGCTGCGGTTGTGGCTCAAACCATAAACTTATAACCGTGAAGCCTGAGTCAACGGAAAAGGATCAGAAGAAATCTGTCAAGAGAGCCGGAGATAATAGTAGATACCCAGTCTACAGAGGAGTCCGAATGAGGACTTGGGGTAAGTGGGTGTCTGAAATCCGCGAGCCCCGGAAGAAGAATCGGATCTGGTTAGGCACCTACGCCACCCCGGAAATGGCGGCTCGAGCACATGATGTTGCTGCAATGAGTATCAAAGGAAGCTCCGCCATACTGAACTTTCCTGAGCTTGCAGCTTCTCTGCCTCGACCAACTTCCGACTCGCCTAGAGATGTTCAAGCTGCAGCGGCAAAAGCAGCTTCCATGGAAGTATTCGATCAGCAAAAACAACCTCTGCCCTCATCTTCTTCTTCGTCCTCTTTATTGTTAAAGCATTCTTCATCTTCTTCATCGCTGGCTGTTTCTTGCTCTGTTGAGCCATCGACCTCAGAGGAGTTAGACGAGATACTAGAGCTGCCAAGCTTAGGAACGAGTTTTGACTGGAACGAGTCGCATAACGAGTTCGTATATGCTGACTCGGTTGATGGGTGGCTCTATCCTCCGCCGTCGTATCACAGCATTCAATACGACGAGGACTGTTGTGGTTTCTTCATTAGTGATCGGATAGAAAGTGGGATACCTTCCTGTGCGTTTGAGGCCACACTGTGGCAATATTAG 831 0.4898 MAEPSNSENDISANWCSSSSPSYCSHSIFPPSPSFSSGSGCGCGSNHKLITVKPESTEKDQKKSVKRAGDNSRYPVYRGVRMRTWGKWVSEIREPRKKNRIWLGTYATPEMAARAHDVAAMSIKGSSAILNFPELAASLPRPTSDSPRDVQAAAAKAASMEVFDQQKQPLPSSSSSSSLLLKHSSSSSSLAVSCSVEPSTSEELDEILELPSLGTSFDWNESHNEFVYADSVDGWLYPPPSYHSIQYDEDCCGFFISDRIESGIPSCAFEATLWQY* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00979 276 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Pte5g00979 276 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Pte5g00979 276 MobiDBLite consensus disorder prediction 165 179 - -
Pte5g00979 276 CDD AP2 77 135 IPR001471 GO:0003700|GO:0006355
Pte5g00979 276 MobiDBLite consensus disorder prediction 1 24 - -
Pte5g00979 276 ProSiteProfiles AP2/ERF domain profile. 76 133 IPR001471 GO:0003700|GO:0006355
Pte5g00979 276 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 59 216 - -
Pte5g00979 276 SMART rav1_2 76 139 IPR001471 GO:0003700|GO:0006355
Pte5g00979 276 SUPERFAMILY DNA-binding domain 76 134 IPR016177 GO:0003677
Pte5g00979 276 FunFam Ethylene-responsive transcription factor 2 75 134 - -
Pte5g00979 276 MobiDBLite consensus disorder prediction 52 69 - -
Pte5g00979 276 MobiDBLite consensus disorder prediction 47 70 - -
Pte5g00979 276 Pfam AP2 domain 75 125 IPR001471 GO:0003700|GO:0006355
Pte5g00979 276 MobiDBLite consensus disorder prediction 140 179 - -
Pte5g00979 276 Gene3D AP2/ERF domain 76 134 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00979 Pte-Chr5 28798312 28800238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00979 51 264 AP2-EREBP Transcription Factor Family AT5G11590 56.944 2.73e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte5g00979 AP2 5.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00979 K09286 - qsa:O6P43_003984 278.485