Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00978 ATGAAAAAGGTCAGGACTTTGATCAATCCAACAAGTGAAGCTGAATCATTTGCAGAACCTGAGCCTGCAAGTTCTATTTCTGATGATACAGAAGAAGATGTCGCTTTTTGTCTTATGATGTTGTCAAGAGACAAATGGAAAAGGCAAAGAGATGAAGTTGAGGAAGTCTATAATGATAATGTTGACCACGGCTATGATGAAGAGGAGGAGGAAGTAGAAGAAGAGGATGAAGCCGGAGGACATAGAGCAAGTCACAAAAACATTAAACTTTGTACTAGAGTGAATAAGCAAAAGCTGGAGAAAGATAATGCTGGCACGTCAGTTTCGATGGAGGATAATAAGAAAACTCATGAATGTCCAGTTTGCTTTAGGATTTTCTCATCAGGGCAAGCATTAGGAGGCCATAAGAGAATCCATGTAATCTATACTTTAGCAACTTCAGAACCAACCAGAAGCTCCATTAAGTTTGGAGACAGCTTGATAGATCTTAATCTTCCTGCTCCAATTGAAGATGATGAGGTTAGCCAGATTGAACATTTTAGCAGTGTCTGA 552 0.3931 MKKVRTLINPTSEAESFAEPEPASSISDDTEEDVAFCLMMLSRDKWKRQRDEVEEVYNDNVDHGYDEEEEEVEEEDEAGGHRASHKNIKLCTRVNKQKLEKDNAGTSVSMEDNKKTHECPVCFRIFSSGQALGGHKRIHVIYTLATSEPTRSSIKFGDSLIDLNLPAPIEDDEVSQIEHFSSV* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00978 183 ProSitePatterns Zinc finger C2H2 type domain signature. 119 139 IPR013087 -
Pte5g00978 183 MobiDBLite consensus disorder prediction 61 76 - -
Pte5g00978 183 Pfam C2H2-type zinc finger 117 139 - -
Pte5g00978 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 117 139 IPR013087 -
Pte5g00978 183 MobiDBLite consensus disorder prediction 57 87 - -
Pte5g00978 183 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 8 177 IPR044303 GO:0006355
Pte5g00978 183 MobiDBLite consensus disorder prediction 1 30 - -
Pte5g00978 183 SUPERFAMILY beta-beta-alpha zinc fingers 113 140 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00978 Pte-Chr5 28698912 28699584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00978 15 177 C2H2 Transcription Factor Family AT3G60580 43.784 3.74e-33 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00978 - - qsa:O6P43_017371 178.718