Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00956 ATGAAGAAGCATAAGTGCAAGCTTTGCTTCAGGAACTTCGCTAATGGTAGAGCATTAGATGGGCATATGAGGTCTCATATGATCCCTCGTCCTCCAAAGCCAGTAAAATCCCCACCAACACAAATAAGTGACGGGGTTGTGCCAGCTTCATTTTCGTCATCTTCTGAAGACGAAGAAGGACAAGGAGGAGAGAAGAGTTTGAGTTATGGTCTGAGAGAGAACCCCAAGAAAAGCGTTAGTATTGTAGATCTTGATATGGAATGTGCTGTTGATGCTTGGTCTGTTGTTCTTCAAGATAGAGAGAGTGAGACTGAGTCATCCAAGAATCCAATTCGGAGACGATCCAGAAGGATTATGACCAATTCAGTTACTTTGGAAGAAGATCACCATGAAACCATGAAAAAGGTCAGGACTTTGATCAATCCAACAAGTGAAGCTGAATCATTTGCAGAACCTGAGCCTGCAAGTTCTATTTCTGATGATACAAAAGAAGATGTCGCTTTTTGTCTTATGATGTTGTCAAGAGACAAATGGAAAAGGCAAAGAGATGAAGTTGAGGAAGTCTATAATGATAATGTTGACCACGGCTATGATGAAGAGGAGGAGGAAGTAGAAGAAGAGGATGAAGCGGTGATCAGATTTTTTGAATCCAGCGACAACACAGACGAGCCGAAACCTAGAAAAAATCGAGTACGAGGAAAATACAAGTGTGAAACATGCAACAAAGTTTTTCGATCTTATCAAGCGTTAGGAGGACATAGAGCAAGTCACAAAAACATTAAACTTTGTACTAGAGTGAATAAGCAAAAGCTGGAGAAAGATAATGCTGGCACGTCAGTTTCGATGGAGGATAATAAGAAAACTCATGAATGTCCAGTTTGCTTTAGGATTTTCTCATCAGGGCAAGCATTAGGAGGCCATAAGAGAATCCATGTAATCTATACTTTAGCAACTTCAGAACCAACCAGAAGCTCCATTAAGTTTGGAGACAGCTTGATAGATCTTAATCTTCCTGCTCCAATTGAAGATGATGAGGGTTAG 1041 0.4063 MKKHKCKLCFRNFANGRALDGHMRSHMIPRPPKPVKSPPTQISDGVVPASFSSSSEDEEGQGGEKSLSYGLRENPKKSVSIVDLDMECAVDAWSVVLQDRESETESSKNPIRRRSRRIMTNSVTLEEDHHETMKKVRTLINPTSEAESFAEPEPASSISDDTKEDVAFCLMMLSRDKWKRQRDEVEEVYNDNVDHGYDEEEEEVEEEDEAVIRFFESSDNTDEPKPRKNRVRGKYKCETCNKVFRSYQALGGHRASHKNIKLCTRVNKQKLEKDNAGTSVSMEDNKKTHECPVCFRIFSSGQALGGHKRIHVIYTLATSEPTRSSIKFGDSLIDLNLPAPIEDDEG* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00956 346 SMART c2h2final6 235 257 IPR013087 -
Pte5g00956 346 SMART c2h2final6 289 311 IPR013087 -
Pte5g00956 346 SMART c2h2final6 4 26 IPR013087 -
Pte5g00956 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 289 311 IPR013087 -
Pte5g00956 346 MobiDBLite consensus disorder prediction 21 71 - -
Pte5g00956 346 Pfam C2H2-type zinc finger 289 311 - -
Pte5g00956 346 Pfam C2H2-type zinc finger 235 258 - -
Pte5g00956 346 Pfam C2H2-type zinc finger 4 28 - -
Pte5g00956 346 SUPERFAMILY beta-beta-alpha zinc fingers 235 311 IPR036236 -
Pte5g00956 346 ProSitePatterns Zinc finger C2H2 type domain signature. 291 311 IPR013087 -
Pte5g00956 346 ProSitePatterns Zinc finger C2H2 type domain signature. 237 257 IPR013087 -
Pte5g00956 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 235 262 IPR013087 -
Pte5g00956 346 SUPERFAMILY beta-beta-alpha zinc fingers 2 31 IPR036236 -
Pte5g00956 346 MobiDBLite consensus disorder prediction 43 57 - -
Pte5g00956 346 Gene3D Classic Zinc Finger 232 311 - -
Pte5g00956 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Pte5g00956 346 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Pte5g00956 346 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 344 IPR044303 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00956 Pte-Chr5 28144574 28145705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00956 1 345 C2H2 Transcription Factor Family AT3G60580 39.607 5.56e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte5g00956 zf-C2H2_6 2.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00956 - - qsa:O6P43_017371 352.058