Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00934 ATGAAGCTTGGAGAGAGGCACCATGCAAATCCAACCATTCATGTACCTCCTTGGACGGTCTTCGATGATCCAACAGCTGACATGTACTCTCCTTACCCATTAAGTGGTGTATGCGCTAGCACGGAAGGCAATGCCAGCAACGGGGGTGACTACTCTCCACTCTACCTGCAGGAGGCATTTGCGGCGTTGCAACGTTACCTCCCGTCAAATGAGTCGGGCGGTGGGGTCGATGTGGACTCCGATTCGGAGCTTTCTGGTCGCGAGTCGGATGCTCCCATGGATGCTTACTCTTGTGATCAGTTCCGAATGTTTGAGTTTAAGGTGAGGAAGTGCGCGCGTGGGAGATCACATGACTGGACTGAGTGTCCCTACGCTCATCCCGGTGAGAAGGCTCGCCGGAGAGACCCTAGAAAGTACCACTATTCCGGGACTGCGTGTCCGGAGTTTCGTAAAGGGAACTGTAAGAAAGGTGATGCTTGCGAGTTTGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCAGCTCGTTACCGGACTCAGCCATGCAAGGATGGGATAAGCTGCCGAAGAAGGGTCTGTTTCTTTGCTCACACACCGGAGCAACTGAGGCTGTTACCGCAGCAGAGTCCAAGTTGTATGAACTCTCCTGATTCGTATGACGGCTCTCCACTGCGCCAGGCGATGGAGTCATCCTGTGTGAAAAGTTTGCCATTTGTAACCTCTCCTTCATCTATATCGCCGCCGAAGACGTCACCTGCAGATTCTCCTCCGATGTCTCCTATGGCGCAGACGCTGAGTCGATCTCTGGGTTCGAACTCTGTTCATGACATGATGGCATCTATGCGTAATTTGCAGCTCGGTAAGGTAAAGTCCTTTTCTCCTCGGAGTGTTCAGATGGGGTCTCCCGGGTATGGATCTCCTAGGGGATCCATGCTTCGACCCGGTTTCTGCAGCATGCCGTCCACCCCAACTCAGGTACAGAACCGTCAGTGTGTTAATTATTTTGATGTCTGGGATCAAATTTGCGAGGAGGAGCCACCCATGGAGAGGGTGGAGTCAGGTAGAGACATCAGGGCTAAGATGTTTGAGAAGCTGAGCAAAGAAAATTCTCTAGAGCGATCCGATCTGGATCCAGGTTCAAGTGGTCCGGATGTTGAGTGGGTCTCTGAGCTGGTGAATTGA 1179 0.5233 MKLGERHHANPTIHVPPWTVFDDPTADMYSPYPLSGVCASTEGNASNGGDYSPLYLQEAFAALQRYLPSNESGGGVDVDSDSELSGRESDAPMDAYSCDQFRMFEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGISCRRRVCFFAHTPEQLRLLPQQSPSCMNSPDSYDGSPLRQAMESSCVKSLPFVTSPSSISPPKTSPADSPPMSPMAQTLSRSLGSNSVHDMMASMRNLQLGKVKSFSPRSVQMGSPGYGSPRGSMLRPGFCSMPSTPTQVQNRQCVNYFDVWDQICEEEPPMERVESGRDIRAKMFEKLSKENSLERSDLDPGSSGPDVEWVSELVN* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00934 392 PANTHER UNKEMPT FAMILY MEMBER 38 391 IPR045234 -
Pte5g00934 392 MobiDBLite consensus disorder prediction 238 264 - -
Pte5g00934 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 145 165 IPR000571 GO:0046872
Pte5g00934 392 Gene3D - 136 210 - -
Pte5g00934 392 SMART c3hfinal6 140 166 IPR000571 GO:0046872
Pte5g00934 392 SMART c3hfinal6 175 198 IPR000571 GO:0046872
Pte5g00934 392 MobiDBLite consensus disorder prediction 364 392 - -
Pte5g00934 392 MobiDBLite consensus disorder prediction 71 91 - -
Pte5g00934 392 FunFam Zinc finger CCCH domain-containing protein 66 98 166 - -
Pte5g00934 392 ProSiteProfiles Zinc finger C3H1-type profile. 141 167 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00934 Pte-Chr5 26893314 26896303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00934 96 259 C2H2 Transcription Factor Family AT5G12850 54.878 6.13e-57 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte5g00934 zf-CCCH 7.3e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00934 - - qsa:O6P43_003933 632.098