Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00933 ATGATTAACAGTAGTCCTAATTTGAGTATTGTCAGCACCGATCTCATTGATGCAAAGCTTGAAGAGCAACAATTATGTGGATCCAAACAGTGCCCAAGTTGTGGTCAAAGGTTTGAAGGCAAACCTCTGGATTGGATGGGTCTACCAGCAGGTGTCAAATTTGATCCGACAGACCAAGAATTAATAGAACATCTTCAAGCAAAAGTGGAGGCAAGAGACCCAAAGTCTCATCCTTTGATAGATGAGTTCATCCCTACGATTGATGGAGAAGATGGAATCTGTTACACTCATCCTGAAAAACTTCCAGGAGTTACAAGAGATGGGTTGAGCAGACACTTCTTCCACAGACCTTCAAAGGCTTACACGACTGGCACAAGAAAAAGAAGGAAAATTCAAAACGAATGTGACTTGAAAAGTGGAGAAACTAGATGGCACAAGACAGGTAAGACTAGACCTGTCATGGTGAATGGAAAACAAAAAGGCTGCAAAAAAATCCTTGTGCTATACACAAACTTTGGGAAAAACAGAAAACCTGAGAAGACCAATTGGGTGATGCACCATTACCATTTAGGACAGCATGAGGAGGAGAAAGAAGGAGAGCTCGTGGTATCGAAGATATTCTACCAGACGCAACCCAGACAAAGTAACTTGTCTGATAAAATCCAAGGTGTAACAACTGTTACAAACGAATGCAGCAGTGATCGTAATAGCAGAAGAGATCATAGTGGCAATGGGAGTAGTTTTTCTCCGAAGAACATAGTCCACCAAAGAGATGAGATGTCTGGAGTTGGGGTTCATCCATTGTCAAGCTATGCTGCTTTAGATATTCATCAACAGCTAAAATCTGACCACTTTAGGTTTACCCCATACAGAAAAAGCTTCGATGAGGTAACATTTAATTTAGTCATCGCAAGCCATATAAATTTATATAATGCTTTATAA 942 0.4045 MINSSPNLSIVSTDLIDAKLEEQQLCGSKQCPSCGQRFEGKPLDWMGLPAGVKFDPTDQELIEHLQAKVEARDPKSHPLIDEFIPTIDGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLKSGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHHYHLGQHEEEKEGELVVSKIFYQTQPRQSNLSDKIQGVTTVTNECSSDRNSRRDHSGNGSSFSPKNIVHQRDEMSGVGVHPLSSYAALDIHQQLKSDHFRFTPYRKSFDEVTFNLVIASHINLYNAL* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00933 313 SUPERFAMILY NAC domain 41 209 IPR036093 GO:0003677|GO:0006355
Pte5g00933 313 FunFam NAC domain-containing protein 73 57 213 - -
Pte5g00933 313 Pfam No apical meristem (NAM) protein 49 190 IPR003441 GO:0003677|GO:0006355
Pte5g00933 313 ProSiteProfiles NAC domain profile. 48 209 IPR003441 GO:0003677|GO:0006355
Pte5g00933 313 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 13 229 IPR044799 GO:0003700
Pte5g00933 313 MobiDBLite consensus disorder prediction 228 252 - -
Pte5g00933 313 Gene3D NAC domain 57 213 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00933 Pte-Chr5 26776017 26778071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00933 14 298 NAC Transcription Factor Family AT5G56620 61.279 8.38e-115 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte5g00933 NAM 6.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00933 - - qlo:115975607 477.633