Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00913 ATGGGAAGAGCAACCAGATGGTTGAAGAGCTTGTTTGGAATAAAGAAAGACAGAGAGCAAAAAGCAAATTCATGTTTCAACAACAGCAGAGATAAAAAATGTTCTACATCTCATTCAGCAAGAGATTCTAGAGGTTTATGTCACAATCCAGAGACTATACCACCCAATATTTCCCCTGCTGAAGCTGCTTGGCTACAATCATTCTACAGTGAGACAGAGAAAGAGCAGAACAAGCATGCCATTGCTGTGGCTGCTGCCACAGCTGCAGCAGCAGATGCTGCAGTAGCTGCTGCTCAGGCAGCTGTAGCTGTTGTTAGGCTAACTAGCCATGGCAGAGGCACCATGCATGGCGGCCCTGAAAAATGGGCTGCTGTCAAGATTCAAACAGTGTTTAGGGGTTATCTGGCAAGGAAAGCACTGCGAGCCTTGAAAGGATTGGTGAAAATACAAGCACTTGTTAGAGGTTATTTAGTGCGGAAGCAGGCCACAGCAACACTTCGTAGTATGCAAGCTCTGATTAGAGCTCAAGCTACAGTTCGAAAGCACAGAACACGAGGGATAATGAACAAGAACCATGACGCATATAGGTCCGAAATGCGAGCACGAAAATCGATGGAGAGGTTTGATGACATCAGGAGTGAGCACACAGCTGCCATTCATAGCAGAAGGCTTTCAGCTAATTCATTTGATACCACAAACAACAATCCAACTAGCATTGATGCTGGAAGTCCAAAGATTGTGGAGATTGACACAGGCTGCAGGCCAAAGTCGTCAAGGTCTAGAAGAACCAACAATTCAATGTCTGATTTTGGAGATGACCCACCATTTCAAACACTCTCCTCTCCTCTCCCATGTCAGCATACTCCTGTGCGTCTATCAGTGCCTGCATATCGTAGAATTTTCCATGAATCATCAGAATGGGGATTAACTGGTGATGAATGTAGGTTCTCCACTGCACAAAGCACTCCACGTTTCACAAACTCATGTGCTTCCAATCCACCTGTAACACCTGCCAAAAGTGTTTGTACTGACAACTATTTCCGCCAATGTTATGGCGACTTCCCCAACTACATGGCCAACACTCAATCATTCAAGGCCAAATTGAGGTCACACAGTGCCCCAAAGCAAAGGCCAGACACTAGTCAAAAGAAGAGACTCTCTCTCAACGAAATGATGGAGTCTAGGAATAGCTTGAGTGGGGTTCGGATGCAGAGGTCGTGCTCACAAGCTCAGGAGACCATCCATTTCAAGAATGCCATAATTGGAAAGCTTTTCAAAGACCATCCGAGTTTACAAGAGAGCCAGAAGAGAGAAACTACGTTCAGAGGAGATGGTGAATAG 1341 0.4549 MGRATRWLKSLFGIKKDREQKANSCFNNSRDKKCSTSHSARDSRGLCHNPETIPPNISPAEAAWLQSFYSETEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMHGGPEKWAAVKIQTVFRGYLARKALRALKGLVKIQALVRGYLVRKQATATLRSMQALIRAQATVRKHRTRGIMNKNHDAYRSEMRARKSMERFDDIRSEHTAAIHSRRLSANSFDTTNNNPTSIDAGSPKIVEIDTGCRPKSSRSRRTNNSMSDFGDDPPFQTLSSPLPCQHTPVRLSVPAYRRIFHESSEWGLTGDECRFSTAQSTPRFTNSCASNPPVTPAKSVCTDNYFRQCYGDFPNYMANTQSFKAKLRSHSAPKQRPDTSQKKRLSLNEMMESRNSLSGVRMQRSCSQAQETIHFKNAIIGKLFKDHPSLQESQKRETTFRGDGE* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00913 446 ProSiteProfiles IQ motif profile. 144 171 IPR000048 GO:0005515
Pte5g00913 446 ProSiteProfiles IQ motif profile. 120 148 IPR000048 GO:0005515
Pte5g00913 446 PANTHER IQ-DOMAIN 5-RELATED 1 393 - -
Pte5g00913 446 MobiDBLite consensus disorder prediction 258 284 - -
Pte5g00913 446 MobiDBLite consensus disorder prediction 27 52 - -
Pte5g00913 446 SMART iq_5 119 141 IPR000048 GO:0005515
Pte5g00913 446 SMART iq_5 142 163 IPR000048 GO:0005515
Pte5g00913 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 162 IPR027417 -
Pte5g00913 446 Pfam IQ calmodulin-binding motif 147 161 IPR000048 GO:0005515
Pte5g00913 446 Pfam IQ calmodulin-binding motif 122 141 IPR000048 GO:0005515
Pte5g00913 446 Pfam Protein of unknown function (DUF4005) 325 407 IPR025064 -
Pte5g00913 446 Gene3D - 99 146 - -
Pte5g00913 446 MobiDBLite consensus disorder prediction 227 241 - -
Pte5g00913 446 MobiDBLite consensus disorder prediction 227 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00913 Pte-Chr5 24448098 24450273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00913 1 403 IQD Protein Family AT3G16490 51.338 4.82e-101 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00913 - - tcc:18588500 551.977