Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00898 ATGGATCCTTTAGATGACAATAGCTGTTGGGATTTCCTTGATCACAATTTGATCGACGACAACACCTTATCGACCGATTTCCTATGGTGTAAACAAAGTGCGGGCACAGAAATTGACTTCTCATCTGGTGCTGTTGCCTACCAAGAGAGGGAAGGCACTCGAAAGAGAGCTCGGAGTGATTCCTGTCTTAAGGCAGGTAGCAAAGCTTGTCGTGAAAGGTTGCGGAGGGAAAGACTTAATGACAGGTTTTCTGATTTGTGCTCTGTTCTGGATCCTGGAAGACCAGCAAAATCAGACAAACCTGTTATACTCGATGACGCAATCCGAGTTTTGAAACAACTTAAATCTGAAGCAGTGGAGCTCAAAGAAACAAATGACAAACTCTCGGAAGAAATAAAAGTTTTGAAGGCCGATAAAAATGAACTTCGGGAAGAGAAAAATTCGTTGAAAGCAAACAAAGAAAAAATTGAAATGCAGTTGAAATCTATGTGTATGTCACCTGCAGGGTTTGTGCCACCACATGCAGCTGCATATTCAGCGGGAGCAAATAAGATGGCTGTTTTTCCTAGCTATGGTTTTGTCCCTATGTGGCAATACATGACTCCATCTGTCCGAGACACCTCACAGGATCATGAACTCAGGCCACCAGCAGCATAA 657 0.4323 MDPLDDNSCWDFLDHNLIDDNTLSTDFLWCKQSAGTEIDFSSGAVAYQEREGTRKRARSDSCLKAGSKACRERLRRERLNDRFSDLCSVLDPGRPAKSDKPVILDDAIRVLKQLKSEAVELKETNDKLSEEIKVLKADKNELREEKNSLKANKEKIEMQLKSMCMSPAGFVPPHAAAYSAGANKMAVFPSYGFVPMWQYMTPSVRDTSQDHELRPPAA* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00898 218 Coils Coil 104 159 - -
Pte5g00898 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 114 IPR011598 GO:0046983
Pte5g00898 218 SMART finulus 69 120 IPR011598 GO:0046983
Pte5g00898 218 Pfam Helix-loop-helix DNA-binding domain 67 115 IPR011598 GO:0046983
Pte5g00898 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 136 IPR036638 GO:0046983
Pte5g00898 218 PANTHER BHLH TRANSCRIPTION FACTOR 7 218 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Pte5g00898 218 Gene3D - 55 143 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00898 Pte-Chr5 23558709 23563789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00898 41 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 63.784 7.01e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte5g00898 HLH 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00898 - - qsa:O6P43_003232 304.679