Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00888 ATGAGCCAGGCCTTTGGATCTATACTTCCTCCAGTCTTTTATACACAGTCAGGAGGTCCATTACCTATGCCAAACTCTGTTGCAGTTGCTCATGCAGAACCCTCCTATACACAGTCTTTTATACACACTTTTGAGAATCGAGGTCGACACGTTTCTTCTGCCACTGATCAAAGTGCATCTAGTGGTTTCTGTAATGGTGCTATCAGCCATCTGAATAGCGTTGCATATGGAAGCAACTGTGGAAACGATAGTACTGCTAATCAGTCCCCTGCTGTCATAAGTTATGAAAGCAAAACTGAAGACTTGACGAAATATGGATTTTCTAATAGATCTGTTCAAAGAGAAGCAGCTCTAACAAAGTTTTGCTTGAAAAGGAAAGAGAGGTGTGTCATTACTCTTAGGAAGGTGTCCTATGAAAGCAGAAAAAAACTTGTAGAGCAACGCCCCAGAGTTAAAGGACAATTTGTTCGTCAGGTGCAGCCTGATCTCCATCCTACTACAGAGAAGAATGATAGTTCACATGATGTCTAG 531 0.4181 MSQAFGSILPPVFYTQSGGPLPMPNSVAVAHAEPSYTQSFIHTFENRGRHVSSATDQSASSGFCNGAISHLNSVAYGSNCGNDSTANQSPAVISYESKTEDLTKYGFSNRSVQREAALTKFCLKRKERCVITLRKVSYESRKKLVEQRPRVKGQFVRQVQPDLHPTTEKNDSSHDV* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00888 176 Pfam CCT motif 114 158 IPR010402 GO:0005515
Pte5g00888 176 ProSiteProfiles CCT domain profile. 114 158 IPR010402 GO:0005515
Pte5g00888 176 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 35 158 IPR045281 GO:0009909
Pte5g00888 176 MobiDBLite consensus disorder prediction 152 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00888 Pte-Chr5 22361782 22362361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00888 49 160 Response Regulator Gene Family AT5G24470 44.643 1.42e-18 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte5g00888 CCT 2.4e-12 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00888 K12130 - gmx:100784383 159.073