LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte5g00887	ATGGCAAGGTTGAATATCGCAGCTACTGATAAGAAAGGAGGTGCATTAGCAGTGGCTGTAGAGAATAACAAGACAAGTCAAATTGCTTTGAAATGGGCTGTGGACAGCATCGTCTCCAAAGGCCAAGCCATCACACTGGTTCATGTTAGAGAACCAGCGGGGAACAGCGTCGCTATATCTAACCTCGGCGAAAATGTTGGTCGAGCGCACAGACAACAACTGGAAAATGAAGCCAAAGATCTCTTCGTTTCATTCCGAGTCTTCTGCCAAAGAAAGAATGTACAATGCAACGAGTTTATGCTTGAGGACGCAGACATTGCAAAAGCACTGGTAGACTTTGCAGCGGACAACGCAATTGAAGTTCTGGTACTTGGGGCCCCATCTCGCAGTGGCCTAGTTAGAAGATTTAGAACCAATGACATTCCTAGCCTTGTATGCAAAGGAGCTCCAGATTTCTGCGCAGTCTACGTCATTTCAAAAGGGAAAATCTCCTCCATGCGATCGTCCACGGCTCCATTACCAACGACACCTTGTATTCGCAATCAGTGGCCCCAGCAGAATGGAGTTAGCCAAGACAGACTGCAGGATGCAAAATCCATAAGCAGCCAACCCCCCGGTGGTATGGAACTAGATATATATTACAGATCACCGTTCACCCGTGGTGGTAGATCTTCTCTCAGCAAGTCGTATGAGTTCTCAGCAATCGACAGTGACATTTCTTTCGTGAGCAGTGGACTGCCAAGCTCTGAGCGCATGTTTCCCTCTTTCTCAGACCATTCGGAAACGACACCTAATCGCCTTTCAAAAGGTGGTACGTTGGATGCCATGAGTTTCGGTTCATCATCTTTCTCAGATAACAAATCAATGGATATGACACCCTTTTCCTCAATTTCCAATGGAATTGCTGGGGCCTCATCATGTAATTGGTCTGCTCATAACACGGATGATGTGGAAGCTGAGGTGAGGAGGCTAAGACTTGAACTCAAGCAAACGATGGACATGTACAGTTCAGCATGCAAAGAAGCACTTACAGCAAAACAAAAGACAATGGACCTTCAACGCTGGAAGTTAGAAGAAGAGAGAAAAACAGAAGAGGCAAGACTATCTGAGCAATCGGAGCTGGAACTTACAGAGAATTATGAGTGCTCAAAAGGTAGCGCTGCCTTGGATGCTGCAGAAGCCTCATATAGGAAAGCTGGTAATGAAGCTGAACAGCGTAAGGAAGAGTTATTTGCATACAGTGATCAACAGCTGAGGTACAGAAGATACACAATCGAGCAGATCAAGGAAGCTACAGATCACTTGAATCCGTCTCGCAAAATTGGGGAAGGTGGCTATGGACCTGTATACAAGGGTCATCTGGATCACACGCCAGTTGCAATCAAAGTTCTCCGTCCAGATGCAGCTCAGGGAAGGTCGCAGTTTCAGCAAGAGGTTGAAGTCTTAAGTTGCATAAGACACCCAAACATGGTTCTCCTGCTTGGAGCATGTCCAGAGTACGGTTGCTTGGTTTATGAACACATGGCAAATGGAAGCTTGGATGACCGCTTGTTCAGGCGTGGGAATACTCCAGTCCTTTCGTGGCAGGTCAGATTCCGGATTGCTGCAGAGATCGGGACAGGGCTGCTTTTCCTTCACCAGACTAAGCCAGAACCAATTGTTCATCGCGATCTAAAACCTGGCAACATATTGCTGGATCGCAATTACGTTAGCAAGATAAGTGATGTGGGGTTGGCGAGGCTTGTCCCTGCATCAGTAGCAGACAGTGTAACTCAGTACCACATGACGTCGACAGCTGGTACATTCTGCTACATTGATCCAGAGTACCAGCAGACGGGCATGCTCGGAACCAAATCTGATATTTACTCCTTCGGAGTGATGCTGCTACAGATAATAACTGCGAAGCCGCCCATGGGTCTAACACATCATGTACAACGATCCATTGAGAGGGGCACTTTCGCTGAGATGCTGGACCCTGCAGTTACTGACTGGCCAGTCGAAGAGGCTCTCAAATTTGCCAAGCTGGCCCTTGGGTGTGCAGAACTAAGGCGAAAGGACAGACCAGACCTGGGAAAAGTTGTATTGCCAGAGCTCAACAGATTGAGAGAACTTGCGGAAGACAATGAAATCAACCATTTTAACGCCATGCATGGCTGGGGAATGGGTAGTACTGCTCAAGCCTCATCATCTGCGACTAGTAGAAATAGAAGTGGAAGCGGTTCAACTGCAGCTCAAGTAAGTGACAACACCTGA	2253	0.4736	MARLNIAATDKKGGALAVAVENNKTSQIALKWAVDSIVSKGQAITLVHVREPAGNSVAISNLGENVGRAHRQQLENEAKDLFVSFRVFCQRKNVQCNEFMLEDADIAKALVDFAADNAIEVLVLGAPSRSGLVRRFRTNDIPSLVCKGAPDFCAVYVISKGKISSMRSSTAPLPTTPCIRNQWPQQNGVSQDRLQDAKSISSQPPGGMELDIYYRSPFTRGGRSSLSKSYEFSAIDSDISFVSSGLPSSERMFPSFSDHSETTPNRLSKGGTLDAMSFGSSSFSDNKSMDMTPFSSISNGIAGASSCNWSAHNTDDVEAEVRRLRLELKQTMDMYSSACKEALTAKQKTMDLQRWKLEEERKTEEARLSEQSELELTENYECSKGSAALDAAEASYRKAGNEAEQRKEELFAYSDQQLRYRRYTIEQIKEATDHLNPSRKIGEGGYGPVYKGHLDHTPVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEHMANGSLDDRLFRRGNTPVLSWQVRFRIAAEIGTGLLFLHQTKPEPIVHRDLKPGNILLDRNYVSKISDVGLARLVPASVADSVTQYHMTSTAGTFCYIDPEYQQTGMLGTKSDIYSFGVMLLQIITAKPPMGLTHHVQRSIERGTFAEMLDPAVTDWPVEEALKFAKLALGCAELRRKDRPDLGKVVLPELNRLRELAEDNEINHFNAMHGWGMGSTAQASSSATSRNRSGSGSTAAQVSDNT*	751

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte5g00887	750	Coils	Coil	314	334	-	-
	Pte5g00887	750	Gene3D	HUPs	15	156	IPR014729	-
	Pte5g00887	750	SUPERFAMILY	Protein kinase-like (PK-like)	414	694	IPR011009	-
	Pte5g00887	750	PANTHER	OS02G0152300 PROTEIN	17	715	-	-
	Pte5g00887	750	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	17	138	-	-
	Pte5g00887	750	SMART	serkin_6	435	698	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte5g00887	750	Gene3D	Transferase(Phosphotransferase) domain 1	508	718	-	-
	Pte5g00887	750	FunFam	U-box domain-containing protein 51	508	708	-	-
	Pte5g00887	750	CDD	STKc_IRAK	441	701	-	-
	Pte5g00887	750	Pfam	Universal stress protein family	18	136	IPR006016	-
	Pte5g00887	750	CDD	STK_N	17	161	-	-
	Pte5g00887	750	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	410	507	-	-
	Pte5g00887	750	MobiDBLite	consensus disorder prediction	723	750	-	-
	Pte5g00887	750	Pfam	Protein kinase domain	438	689	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte5g00887	750	Coils	Coil	389	409	-	-
	Pte5g00887	750	Gene3D	Phosphorylase Kinase; domain 1	405	507	-	-
	Pte5g00887	750	ProSiteProfiles	Protein kinase domain profile.	435	698	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte5g00887	750	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	553	565	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte5g00887	Pte-Chr5	22270195	22273768	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte5g00887	1	728	Receptor kinase-like Gene Family	AT1G78940	54.365	0.0	740

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Pte5g00887		Pkinase	3.2e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte5g00887	-		-	qsa:O6P43_007802	910.983