Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00883 ATGGACCAGGAGAGCACAGAATCACAGGCGTCAACAACAAAGGCAAGAGGAAAGAAGACGGTGCTGCCATATCCAACACCAAAAGTCAGAGACCATTACCTTCTGGGCAAGAAGGTAGGACAAGGACAATTTGGTGTAACATATCAATGTACCCACAAAAAAACAGGCAATATTTTCGCCTGCAAGTCGATCCCAAAACGGAGGCTGTTGTGCAGGGAGGATTATGATGATGTGTGGAGGGAGATTCAGATCATGCATCACTTGTCTGAACACCGCAATGTGGTTAGGATCGAAGGGACATACGAGGATTCTTTGTTTGTTCACTTGGTTATGGAGCTTTGTGGTGGGGGCGAGCTGTTTGATAGAATTATCCGAAAGGGGCATTTCAGTGAGAAAGAGGCTGCCAGCTTGATCAAGGTTATTGTTGGGGTGGTTGAGGCTTGTCATTCTCTTGGGGTCGTTCATAGGGATCTCAAGCCTGAGAATTTCTTGTTTGATAGTCCTGATGATGATGCCAAGCTTAAAGCAACGGACTTTGGCTTGTCTGTGTTCCATAAGCCAGGACAATACTTTCATGATGTAGTAGGAAGTCCCTACTATGTTGCTCCTGAAGTGTTGTTGAAGCAATATGGACGAGAAGTTGATGTATGGAGTGCTGGTGTTATCCTCTATATCTTGTTGAGTGGGGTTCCTCCTTTCTGGGCAGAAAGTGAAGCAGGAATTTTCGAACAGGTATTGCATGGAAAATTGGATTTTAAATCCGAACCATGGCCAAGTATCTCAGGAAGTGCCAAAGATTTGATAAACAAGATGCTTGAAAGGGATCCTAGGCAAAGGTTATCTGCCTATCAAGTCCTATGTCATCCTTGGATTCTGGATGACAGAGTTGCCCCCGACAAACCACTTGATTCAGCAGTGTTGGCACGTTTAAAGCAGTTTTCAGCAATGAACAAACTTAAGAAGATGGCTCTGCGTGTAATTGCAGAGAGACTTTCGGAGGAAGAGATTGGTGGTTTGAAAGAGTTGTTCAAAATGATTGACACAGATAACAGCGGAACAATAACATTTGAAGAATTGAAAGTAGGCCTGAGAAAAGTGGGTTCAGATCTTATGGAATCTGAAATCAAGTCCCTTATGGAAGCAGCTGATATAGACAACAATGGATCAATAGACTACGGTGAATTTCTTGCTGCTACGTTGCACGTGAATAAGATGGAGAGGGAGGAGAACCTACTTGCAGCCTTCTCCTATTTTGACAAAGACAGTAGTGGTTACATTACCATTGATGAACTTCAACTGGCCTTCAATGAATTTAATCTAGTTGATGTCCGAGTGGATGATATAATCAAAGAAGTTGATCAAGACAACGATGGACGAATAGATTATTCAGAATTTACAGCAATGATGAAGAAAGTGGATGGAGGAGTTGGTAGGAGCAGGAGCAGAAGGGGAAACTTGGGGTTCAATCTGGGGGATGCTCTTCTTGCAAGCAACTCCTCCTCAAACACAAAGTAA 1515 0.433 MDQESTESQASTTKARGKKTVLPYPTPKVRDHYLLGKKVGQGQFGVTYQCTHKKTGNIFACKSIPKRRLLCREDYDDVWREIQIMHHLSEHRNVVRIEGTYEDSLFVHLVMELCGGGELFDRIIRKGHFSEKEAASLIKVIVGVVEACHSLGVVHRDLKPENFLFDSPDDDAKLKATDFGLSVFHKPGQYFHDVVGSPYYVAPEVLLKQYGREVDVWSAGVILYILLSGVPPFWAESEAGIFEQVLHGKLDFKSEPWPSISGSAKDLINKMLERDPRQRLSAYQVLCHPWILDDRVAPDKPLDSAVLARLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFEELKVGLRKVGSDLMESEIKSLMEAADIDNNGSIDYGEFLAATLHVNKMEREENLLAAFSYFDKDSSGYITIDELQLAFNEFNLVDVRVDDIIKEVDQDNDGRIDYSEFTAMMKKVDGGVGRSRSRRGNLGFNLGDALLASNSSSNTK* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00883 504 Pfam EF-hand domain pair 409 470 IPR002048 GO:0005509
Pte5g00883 504 Pfam EF-hand domain pair 339 399 IPR002048 GO:0005509
Pte5g00883 504 Gene3D Transferase(Phosphotransferase) domain 1 119 301 - -
Pte5g00883 504 SMART serkin_6 33 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte5g00883 504 ProSitePatterns EF-hand calcium-binding domain. 347 359 IPR018247 -
Pte5g00883 504 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 465 - -
Pte5g00883 504 ProSiteProfiles EF-hand calcium-binding domain profile. 440 475 IPR002048 GO:0005509
Pte5g00883 504 Pfam Protein kinase domain 35 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte5g00883 504 FunFam Calcium-dependent protein kinase SK5 119 303 - -
Pte5g00883 504 CDD EFh 339 398 IPR002048 GO:0005509
Pte5g00883 504 MobiDBLite consensus disorder prediction 1 16 - -
Pte5g00883 504 ProSitePatterns EF-hand calcium-binding domain. 453 465 IPR018247 -
Pte5g00883 504 Gene3D - 302 474 - -
Pte5g00883 504 ProSiteProfiles Protein kinase domain profile. 33 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte5g00883 504 ProSiteProfiles EF-hand calcium-binding domain profile. 370 405 IPR002048 GO:0005509
Pte5g00883 504 Gene3D Phosphorylase Kinase; domain 1 34 118 - -
Pte5g00883 504 FunFam Calcium-dependent protein kinase 1 35 118 - -
Pte5g00883 504 ProSitePatterns Protein kinases ATP-binding region signature. 39 62 IPR017441 GO:0005524
Pte5g00883 504 SUPERFAMILY EF-hand 330 473 IPR011992 -
Pte5g00883 504 MobiDBLite consensus disorder prediction 1 22 - -
Pte5g00883 504 CDD STKc_CAMK 32 290 - -
Pte5g00883 504 ProSiteProfiles EF-hand calcium-binding domain profile. 334 369 IPR002048 GO:0005509
Pte5g00883 504 SMART efh_1 410 438 IPR002048 GO:0005509
Pte5g00883 504 SMART efh_1 374 402 IPR002048 GO:0005509
Pte5g00883 504 SMART efh_1 338 366 IPR002048 GO:0005509
Pte5g00883 504 SMART efh_1 444 472 IPR002048 GO:0005509
Pte5g00883 504 CDD EFh 411 470 IPR002048 GO:0005509
Pte5g00883 504 ProSitePatterns EF-hand calcium-binding domain. 383 395 IPR018247 -
Pte5g00883 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Pte5g00883 504 FunFam Calcium-dependent protein kinase 1 299 473 - -
Pte5g00883 504 SUPERFAMILY Protein kinase-like (PK-like) 29 301 IPR011009 -
Pte5g00883 504 ProSiteProfiles EF-hand calcium-binding domain profile. 406 438 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00883 Pte-Chr5 21352902 21355729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00883 16 494 EF-hand Containing Proteins AT1G35670 79.332 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pte5g00883 Pkinase 4.6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00883 K13412 - tcc:18592952 817.764