Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00875 ATGAGCGCGATAAGACATTACTTATTGTCAAATCCTTGCAGCCCAATCGTCAGAGCTACCAAGTGTACAAGAGCTCCTTTATTTGTAAGAAACATGTCTAGATCAAATGAAGCCCCTGCTTTCAACAGACCGAGACTGGTTGCAAAGAAGTTCTTGGCGCAAACTCAACATGAAGGCGACGGTGCGGTTGTTAGGAGAGCAATTGGAAGGGATGGGTTCAGAAATTTTGATCCTTTTCTGATGTTAGACCACTTCTCAGTTTCTCCTCCTGCTGGATTTCCTGATCATCCTCACAGAGGTTTTGAGACTGTCACGTACATGCTAAAGGGAGGTATAACTCATCAAGATTTTGCTGGACACATGGGTACTATTAGAGAAGGTGATGTTCAGTGGATGACAGCAGGTAGAGGAATCATTCACTCTGAAATGCCTGCTGGGGAAGGACCCAATGAAGGTTTGCAGCTGTGGATCAATCTATCTTCAAAACACAAAATGATGGATCCAAAGTACCAAGAAATGTCAAGTATGGAGATACCTAGACTAGAAAAAGAAGGGGTTGAAGTCCGAGTGATAGCAGGAGAAGGGATGGGAGTCACTTCACCAGTCTATACTCAAACTCCAGCCATGTTCTTGGATTTCAGTCTTCAACCTGGAGCTCAGGTGCATCAACCTATAACTGAGATCTGGAATTCGTTTGTGTATATTATCAATGGGGAAGGAACCTTTGGCATCCCAAACTCTTCACCCGTTTCAGCTCACCATGTTCTGGTTTTGAGTCCTGGAGAGGGTCTCAGTGTGTGGAATATGTCTATGAAGCCATTGAGATTTGTGCTGATTGGAGGGCAACCACTGAATGAGACCATAGTTCAGTATGGTCCTTTTGTAATGAACACACATTCTGAAATTGAAAATGCTATGACGGATTATCACTACTTGAGAAATGGATTTGAAAAAGGGCTGAGCACTGAGCTTTTGTTTGAATTGGGATCACAAGTCTTACAACTAAATCCGATAGTAGATTTTGCAAATATTGGATTGGTGTGA 1044 0.4282 MSAIRHYLLSNPCSPIVRATKCTRAPLFVRNMSRSNEAPAFNRPRLVAKKFLAQTQHEGDGAVVRRAIGRDGFRNFDPFLMLDHFSVSPPAGFPDHPHRGFETVTYMLKGGITHQDFAGHMGTIREGDVQWMTAGRGIIHSEMPAGEGPNEGLQLWINLSSKHKMMDPKYQEMSSMEIPRLEKEGVEVRVIAGEGMGVTSPVYTQTPAMFLDFSLQPGAQVHQPITEIWNSFVYIINGEGTFGIPNSSPVSAHHVLVLSPGEGLSVWNMSMKPLRFVLIGGQPLNETIVQYGPFVMNTHSEIENAMTDYHYLRNGFEKGLSTELLFELGSQVLQLNPIVDFANIGLV* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00875 347 Gene3D Jelly Rolls 58 310 IPR014710 -
Pte5g00875 347 CDD cupin_pirin_N 62 159 - -
Pte5g00875 347 Gene3D Jelly Rolls 179 284 IPR014710 -
Pte5g00875 347 Pfam Pirin 64 157 IPR003829 -
Pte5g00875 347 CDD cupin_pirin_C 207 283 - -
Pte5g00875 347 FunFam pirin 58 190 - -
Pte5g00875 347 Pfam Pirin C-terminal cupin domain 210 314 IPR008778 -
Pte5g00875 347 PANTHER PIRIN-RELATED 32 319 IPR012093 -
Pte5g00875 347 SUPERFAMILY RmlC-like cupins 45 322 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00875 Pte-Chr5 20859626 20861998 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00875 44 317 Calmodulin-binding Proteins AT3G59220 61.232 2.72e-121 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00875 K06911 - mnt:21404588 471.085