Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00871 ATGGACAATCTATATGCATCAGAAGACGCAAATGGCCTCAGCTGCGGCTACCCTTTTCTATACTCCTCTAACTTACCTTCAAAGGATAAAGTCTATGGAGACATGGGTTCGCTCTCTCTCAGTTCCAACTATAGAAGGAATGCAGCTGTTTCTTCTTCTTCTCTAGACAGTGCTAAAGCATGTAAGAGCAGTTGTGAGATGGAAGATGCCAGAACTAAATGGTCTTTTCCATTTCTGACTGACTGTGATCTGAGTACAAGAGTCTACGAGGAACACCACAGCAGTGATGCTCTTGATGGTAAAGCCTCTGACTCCAGTGAGAAAAGTGAGGATTTACGTCATAATGCTGCAGATCCTGACGACAAGAGTCTTAATGAGAAGCTAGTTACTGGGAAAGAGATAGATAGTGGGCAATCTAAGCTCTGTGCAAGAGGCCATTGGAGGCCTGCAGAAGACTCAAAGCTTAAGGAACTTGTTGCTCTTTATGGTCCTCAGAACTGGAACCTTATAGCAGAAAAGCTTGAAGGGAGATCAGGTAAGAGCTGTAGATTGAGATGGTTCAACCAGTTGGACCCCAGGATTAACAGGAGAGCTTTCAGTGAAGACGAAGAAGAGAGACTGATGCAAGCTCACAGAGTTTATGGAAACAAATGGGCCATGATTGCTAGGCTATTCCCTGGAAGAACTGACAATGCAGTCAAGAACCATTGGCATGTTATAATGGCAAGAAAGTACAGAGAACAATCCAGTGCCTATAGAAGGAGGAAGCTGTGTCAAACTGTCTATGGAAGGATGGAGGATAATACAGCGTTTCCCTGCATAAGTACTGACACAGCTAGCACAACAGAACCATCACCATACTTTCTCAATGTTTTCTCCAATGGAGGATTGAATAGTATCTCTGGTTATCCTTATGGCTCATTCTATGAAGCTTGTGGTGGGGTTGATTATGCCTTAAATGGTACACCCCACTTGACTGGTCGGAGGGAAGCAAACTCAAGCAATTCTAACAGCAATAACATGATGAGCTTGATTAGCCAAAGCAGATACTGGGATAGGCCAAATAATGAAGCTAACATATCAGATGCATATCTCCATCATTATCCATATATGATGCCAATGCAACTGTCAAACACCCACAAGTTTTTCAGTTTCTCATCAAATTCCATGGCATTCACAGGCCAAACATCTACCAATGAACCTTCTTCATCTGCTGCAGATACCAGGGCATCAGTCACACATAATACTAATACAACTGCTGCTGCCACCGAGACAGTTCCTCCTCCATTTATTGACTTTCTAGGGGTAGGAGCCACATGA 1320 0.4341 MDNLYASEDANGLSCGYPFLYSSNLPSKDKVYGDMGSLSLSSNYRRNAAVSSSSLDSAKACKSSCEMEDARTKWSFPFLTDCDLSTRVYEEHHSSDALDGKASDSSEKSEDLRHNAADPDDKSLNEKLVTGKEIDSGQSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEDEEERLMQAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRKLCQTVYGRMEDNTAFPCISTDTASTTEPSPYFLNVFSNGGLNSISGYPYGSFYEACGGVDYALNGTPHLTGRREANSSNSNSNNMMSLISQSRYWDRPNNEANISDAYLHHYPYMMPMQLSNTHKFFSFSSNSMAFTGQTSTNEPSSSAADTRASVTHNTNTTAAATETVPPPFIDFLGVGAT* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00871 439 FunFam MYB transcription factor 197 267 - -
Pte5g00871 439 Pfam Myb-like DNA-binding domain 196 239 IPR001005 -
Pte5g00871 439 Pfam Myb-like DNA-binding domain 144 190 IPR001005 -
Pte5g00871 439 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 190 IPR017930 -
Pte5g00871 439 MobiDBLite consensus disorder prediction 93 129 - -
Pte5g00871 439 CDD SANT 147 188 IPR001005 -
Pte5g00871 439 ProSiteProfiles Myb-like domain profile. 191 241 IPR001005 -
Pte5g00871 439 FunFam MYB transcription factor 144 195 - -
Pte5g00871 439 CDD SANT 198 238 IPR001005 -
Pte5g00871 439 SMART sant 143 192 IPR001005 -
Pte5g00871 439 SMART sant 195 243 IPR001005 -
Pte5g00871 439 MobiDBLite consensus disorder prediction 93 130 - -
Pte5g00871 439 ProSiteProfiles Myb-like domain profile. 144 190 IPR001005 -
Pte5g00871 439 Gene3D - 197 261 - -
Pte5g00871 439 PANTHER MYB PROTEIN-RELATED 136 350 - -
Pte5g00871 439 SUPERFAMILY Homeodomain-like 144 237 IPR009057 -
Pte5g00871 439 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 191 245 IPR017930 -
Pte5g00871 439 Gene3D - 144 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00871 Pte-Chr5 20659842 20662116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00871 105 256 MYB Transcription Factor Family AT1G69560 73.026 8.48e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte5g00871 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00871 K09422 - jre:109009907 448.358