Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte5g00861 | ATGGAAGTTCTCTCTCCCCCGTCGTATATCCCTAATGCAAATTGGCCTGTTGAAGATGACAGAAACACAAAATGGACCGTAGCTGAGAACAAATTGTTTGAAAATGCTTTAGCAGTGTATGATAAGGACATCCCAGATCGGTGGCATAGAGTTGCAGCAACAATTCCTGGAAAAACTGTTGCTGATGTTATTAAGCATTACAGGGAACTGGAGATTGATGTTAGTAACATAGAAGCTGGGTTGGTACCACTTCCTGGTTATGATACTACTCAATTCACACTAGAATGGGTAAACACTCAAGGGTATGATGGATTTAAACAGTCTTATGGCCTTTGCGGAAAGAGATCTTCATCTGGGAGGCCTGCTGATCAGGAAAGGAAAAAAGGAGTTCCATGGACAGAGGAAGAGCATAAGTTGTTCCTGCTGGGATTGAAAAAATATGGTAAAGGAGATTGGAGGAATATTTCTCGCAACTTTGTGATTACTAGAACACCAACACAAGTGGCAAGCCATGCTCAGAAGTATTTCATAAGGCAACTCTCAGGAGGCAAAGACAAAAGGAGAGCTAGTATTCATGATATCACAACAGTTCATCTCAACGATACTAAATTACCATCTCATCCTTCACAAGACAGTAATAGTAATAATGATAATAATAATAAGACATTACTATTGTCTTCGTCTCAACAACACCCCTTGATGTTTCCACAGCAACAGCAGAGAGCAAATACTCATAATTGGAATCAAAAACTGGTCATCTCATCTTACGGTGCTGAGTTGAAAATGCTAGAGCAAGTACTGGATGGAGAGGCTGCTCATGAATCTTACATAGGATCTCAGGTTCAAAATCTTGTTTACCCCATGGATTCTAAGCTACACTACTCATCATAA | 891 | 0.4007 | MEVLSPPSYIPNANWPVEDDRNTKWTVAENKLFENALAVYDKDIPDRWHRVAATIPGKTVADVIKHYRELEIDVSNIEAGLVPLPGYDTTQFTLEWVNTQGYDGFKQSYGLCGKRSSSGRPADQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVHLNDTKLPSHPSQDSNSNNDNNNKTLLLSSSQQHPLMFPQQQQRANTHNWNQKLVISSYGAELKMLEQVLDGEAAHESYIGSQVQNLVYPMDSKLHYSS* | 297 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte5g00861 | 296 | ProSiteProfiles | Myb-like domain profile. | 124 | 176 | IPR001005 | - | |
| Pte5g00861 | 296 | FunFam | Transcription factor SRM1 | 17 | 84 | - | - | |
| Pte5g00861 | 296 | Pfam | Myb-like DNA-binding domain | 131 | 176 | IPR001005 | - | |
| Pte5g00861 | 296 | SUPERFAMILY | Homeodomain-like | 126 | 179 | IPR009057 | - | |
| Pte5g00861 | 296 | ProSiteProfiles | SANT domain profile. | 132 | 180 | IPR017884 | - | |
| Pte5g00861 | 296 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 127 | 179 | IPR006447 | GO:0003677 | |
| Pte5g00861 | 296 | SUPERFAMILY | Homeodomain-like | 23 | 71 | IPR009057 | - | |
| Pte5g00861 | 296 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 124 | 180 | IPR017930 | - | |
| Pte5g00861 | 296 | MobiDBLite | consensus disorder prediction | 200 | 223 | - | - | |
| Pte5g00861 | 296 | CDD | SANT | 131 | 176 | IPR001005 | - | |
| Pte5g00861 | 296 | ProSiteProfiles | SANT domain profile. | 20 | 75 | IPR017884 | - | |
| Pte5g00861 | 296 | CDD | SANT | 24 | 70 | IPR001005 | - | |
| Pte5g00861 | 296 | Gene3D | - | 17 | 84 | - | - | |
| Pte5g00861 | 296 | PANTHER | DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 21 | 249 | IPR043363 | - | |
| Pte5g00861 | 296 | SMART | sant | 128 | 178 | IPR001005 | - | |
| Pte5g00861 | 296 | SMART | sant | 21 | 73 | IPR001005 | - | |
| Pte5g00861 | 296 | FunFam | transcription factor MYB1R1 | 130 | 181 | - | - | |
| Pte5g00861 | 296 | Gene3D | - | 130 | 180 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte5g00861 | Pte-Chr5 | 20154265 | 20156815 | Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Pte5g00861 | Myb_DNA-binding | 1.4e-12 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte5g00861 | - | - | qsa:O6P43_013995 | 385.185 |