LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte5g00854	ATGTCTTCAATGGCATGGATTCAAGTATTGACTGCAAATTTGTATTTACTTCTTTCTTTCATTAAAAAATTTCCAGGGGAAAAGGGCATCGGAAAGCATGGAAAACCTCTTCATTATAAGAATAGCAGCTTCCACAGGATCATTCCTAGCTTTATGATTCAGGGAGGTGATTTTACTCATGGTAATGGAATGGGTGGTGAATCTATCTACGGAGAAAAGTTTGCTGATGAAAATTTTAAGCTGAAGCATACGGGACCAGGTCTTCTGTCAATGGCAAATGCAGGTCGTGATACCAATGGATCGCAATTCTTCATCACCACAGTCACCACCAACTGGTTGGATGGCAGACATGTGGTGTTTGGAAAAGTACTATCTGGGATGGATGTGGTTTACAAGATTGAGGCTGAAGGACAACAAAGTGGCACTCCCAAGAGCAAGGTTGTCATAGTTGACAGTGGTGATCTACCTCTTTAG	474	0.4156	MSSMAWIQVLTANLYLLLSFIKKFPGEKGIGKHGKPLHYKNSSFHRIIPSFMIQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGLLSMANAGRDTNGSQFFITTVTTNWLDGRHVVFGKVLSGMDVVYKIEAEGQQSGTPKSKVVIVDSGDLPL*	158

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte5g00854	157	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	19	154	IPR002130	GO:0000413\|GO:0003755
	Pte5g00854	157	FunFam	Peptidyl-prolyl cis-trans isomerase CYP19-2	19	155	-	-
	Pte5g00854	157	SUPERFAMILY	Cyclophilin-like	19	154	IPR029000	-
	Pte5g00854	157	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	25	154	-	-
	Pte5g00854	157	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	38	151	IPR002130	GO:0000413\|GO:0003755
	Pte5g00854	157	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	39	56	IPR020892	GO:0003755\|GO:0006457
	Pte5g00854	157	Gene3D	-	16	156	IPR029000	-
	Pte5g00854	157	PIRSF	Peptidylpro_ismrse	17	156	IPR024936	GO:0003755
	Pte5g00854	157	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	115	130	IPR002130	GO:0000413\|GO:0003755
	Pte5g00854	157	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	102	114	IPR002130	GO:0000413\|GO:0003755
	Pte5g00854	157	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	44	56	IPR002130	GO:0000413\|GO:0003755
	Pte5g00854	157	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	87	102	IPR002130	GO:0000413\|GO:0003755

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte5g00854	Pte-Chr5	19861169	19861916	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte5g00854	38	157	U-box Gene Family	AT5G67530	46.281	1.60e-23	94.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte5g00854	K01802		-	cpap:110823753	257.684