LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte5g00823	ATGACGCTAGAAGATTTCTTTACCTTGACTGAAATGAAAGATGGGCTTGCTGCTCCCTCTCGTGTGCAAGACTTGGTCTCCATTATGCAGAAGGACAAAACTTCTGTTATGAAAAACATAGGTGATGCGACGAGGCAGTGGGCTGCTGTTGCAAGCACCATTGCTGCCACTGATAATAAAGATTGTCTAGATGTATTTATTCAGTTAGATGGGCTTCAATTCATTGATAGATGGCTAAAAGATGCACAAAATTTTACTGTGGATGCAAATGACAGTTTTACTGAAGAGTCAATCACTGCTTTGTTGCGTGCACTGGAAAAGCTTAATATAGACGGTGAGAGATCGATATCTTCAGGAATTTGTGCTACTGTTAGAAGCCTGCTTGGCCATCATAGTTCTAGAGTTCAGGATAAAGCAAGAGCGTTGCTTGATGTTTGGAAAATTGATGAAAAAGGCGACTTGAAAAGTCCAAGTTTGGGGCTGGCCAAGGTCAATAGTGGGGATGAAAACCATGGCATGGAGGATGCTGTGGCAACTTCAGACGATGCTCTATCCAAAGAGAAGGGACAAGTGGAGTGTAATTTTTCAGGGCCTGGTAGAGGTGAAAACTCACCACCAAGGAGCATTGATAATATTCAACCAGAAAGGGTGGCCGATTTACTGAATCCTCGTTCTCCAATAGATGTAGTTAGTGTTGACACAAGAGATCAAAATGGGGATCATCTGAGTAATTGGAATAATTCTGTTCAATGTTCTCCTACAAAGAAAGGGTCACCTTTATGCCCTGAAGACAAGATTACTTCTGTTGGAACTTGTAGTTTTCCTGATTCAAGGCCAGGAGACACACAAGGACAGTCAGAAGTTTCTCAGCTGAAAGAAGCATCCAATAATGAAAAGCAAGTGCAAGAGTTCAGTCCTCTGCCAGAGCAACCAGGGAGTACAGAAGTTTCTCCTTCGTCCAAAAAGGTGGAACGTGGATCTGTTTCATTAATATCTGATGGGGGAAATGTTCAGAGATTGTTGAGAGAATCTACTTCACAAAAAAATGTTGGGGATTGCGAAAGTGGGACTTGTCAAAATGTTTCTTCTGTTGATGGCATGCCAATGACTGATATGGATAACATTAGAAATATCCAAGAGGTACCGGATGCAACTGGAAATGATGATAAGAGTTTTAATGCTTTGCATGATCTAATGGTTGGTAGCAACAAATCACGAAATTATGCAGAACTGGAAGCCTCTTTATCCAGAATTGCAAGTTCCAGAGTATTAGATGAAAAATTGGAGCGTGTTAGCAATGGAAGTGAGAATATGACTTGTAATTCTGACTCTGCCCCAGCAATGAGGGCTAAAAGTCAAAATGTAATCGACAAGAGAAGGTCTGACATTGAACTCGAGTATGGATTTGATGCTTTGCAAGTTGCTAGGCAAGTTGCACAAGAAGTGGAGAGAGAAGTTGGCGATCACAGAGAGCCATTCTGCAGTTCTTCTTCAGAGAAGATCTCTGAATGTGGTGGGATCAGACAACCAGGTAGCCCTGACTCTATAGGAAAACAAGACCTACCTGCTGAAGTTCTGCCAAAAGCATCATCAAGCACACATAGTGATTCTACTGAGGCATATTCTGCAGGGGAGGAGTGTGCAGCTAATTCAGAAAATTCAGAGCCCCGTGCTGTATTCACACTCAACATGGCTTCCTCATTGATTGCTGAAGCATCTCAAGAACCAGAGAACAAATCTGAACAAGGTCGTTGTATATTTGATCTTAATGAAGAAGTCTGCTCTGATGATATAGAGCTTCCTGTAAATGCAGCTTCTGCACACATTCCGGTTGTTTCTGCTCCAAGGCAGGCATCAACCTCTGGGTTACCTGCAGCCCCTTTACAGTTTGAGGGAGCGCTAGGATGGAAAGGATCAGCTGCTACTAGTGCTTTTCGTCCAGCTTCTCCTCGCAAGACTTCTGATTTGGATAAGAGTATTTCCTTGGATGGTACTTCGGAAACTTCTAAGCAGAGGCAGGGTGGCCTTGATATTGATCTTAATGTTGCCGAGGGCATTGATGGTTTGGAAAAGAAGACTGCAGTGGGATCTGGCCTTCCCTCGAGGGGATCTCATGTGGAAAAAAGGTCAGGCAAGCTCAACTTGGATTTAAATAGTATGAGTGATGATAGTGAAGCTCAACCATCAGATCCAAGGACGGAGAGACAGCAGCTTCACTGTAACCGAAATGGTAATCACAATGCATCACCGGCCTCCTCCTCATCAATCTTGCAACCTTCCATCAGAAACTTCGACTTGAATGGACCATATTCTCACAATGACATAGTGGAACAAGGGCAAGGTAAATCTTGTCTAGGCAATTCATATGAAAGGCCTACGTCAGATGCGCCTGTTATTTCTATCTTGGGTACTAGAGTAGAAGTCAATAAGAAGGAATACGCCCACTCCTCTCAGCTTTTATCCTTCCCTCATGGCAAAGCCATTGAACCCGCAATGGACTTTGGCAATGCCAGAGGCGGTGGAATTTTGGGGCTTGTTCCAACAGTGTCCTACAGTCATTCGCCAGTTTTTAGCTACAATGGACTGACTACAGCACCCAACATGTCTCTGTCTCCAGCCATTTATGGATCAGGTGGCACAATTCCATACATGGTGGACTCGAGAGGGTCCCCTGTCATGCCACAAATTATGGGTTCCAACTCGACGGTTCTTCCAGCCTACAGTCAACCTCCGTATGTCATGAACATGAGTGGTCTACAGCCTGGTTTGAATGGAGTTGGGCCTTCAAGACCACATTTGGACTTGAATTCTGGCTTCCTAATTGACGGTGGGAATAATGAATCTTTCAGGCAATTTCTTGTTCCAGGCGGAGGGATTACTCTGGAGGACCATCCAAGAAACATCCCACAGCCCTCTAGTTCTGGGATAGTAGGGAAAAGGAAGGAACCAGACAGCGGTTGGGAAAGCTACCCGTTTAACTACAAGCATCAGCAACCTCCGTGGAAGTAG	3009	0.4417	MTLEDFFTLTEMKDGLAAPSRVQDLVSIMQKDKTSVMKNIGDATRQWAAVASTIAATDNKDCLDVFIQLDGLQFIDRWLKDAQNFTVDANDSFTEESITALLRALEKLNIDGERSISSGICATVRSLLGHHSSRVQDKARALLDVWKIDEKGDLKSPSLGLAKVNSGDENHGMEDAVATSDDALSKEKGQVECNFSGPGRGENSPPRSIDNIQPERVADLLNPRSPIDVVSVDTRDQNGDHLSNWNNSVQCSPTKKGSPLCPEDKITSVGTCSFPDSRPGDTQGQSEVSQLKEASNNEKQVQEFSPLPEQPGSTEVSPSSKKVERGSVSLISDGGNVQRLLRESTSQKNVGDCESGTCQNVSSVDGMPMTDMDNIRNIQEVPDATGNDDKSFNALHDLMVGSNKSRNYAELEASLSRIASSRVLDEKLERVSNGSENMTCNSDSAPAMRAKSQNVIDKRRSDIELEYGFDALQVARQVAQEVEREVGDHREPFCSSSSEKISECGGIRQPGSPDSIGKQDLPAEVLPKASSSTHSDSTEAYSAGEECAANSENSEPRAVFTLNMASSLIAEASQEPENKSEQGRCIFDLNEEVCSDDIELPVNAASAHIPVVSAPRQASTSGLPAAPLQFEGALGWKGSAATSAFRPASPRKTSDLDKSISLDGTSETSKQRQGGLDIDLNVAEGIDGLEKKTAVGSGLPSRGSHVEKRSGKLNLDLNSMSDDSEAQPSDPRTERQQLHCNRNGNHNASPASSSSILQPSIRNFDLNGPYSHNDIVEQGQGKSCLGNSYERPTSDAPVISILGTRVEVNKKEYAHSSQLLSFPHGKAIEPAMDFGNARGGGILGLVPTVSYSHSPVFSYNGLTTAPNMSLSPAIYGSGGTIPYMVDSRGSPVMPQIMGSNSTVLPAYSQPPYVMNMSGLQPGLNGVGPSRPHLDLNSGFLIDGGNNESFRQFLVPGGGITLEDHPRNIPQPSSSGIVGKRKEPDSGWESYPFNYKHQQPPWK*	1003

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte5g00823	1002	MobiDBLite	consensus disorder prediction	693	756	-	-
	Pte5g00823	1002	MobiDBLite	consensus disorder prediction	659	675	-	-
	Pte5g00823	1002	MobiDBLite	consensus disorder prediction	429	453	-	-
	Pte5g00823	1002	Pfam	TFIIS helical bundle-like domain	101	147	IPR017923	-
	Pte5g00823	1002	SUPERFAMILY	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	61	150	IPR035441	-
	Pte5g00823	1002	MobiDBLite	consensus disorder prediction	489	553	-	-
	Pte5g00823	1002	Gene3D	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	17	151	IPR035441	-
	Pte5g00823	1002	ProSiteProfiles	TFIIS N-terminal domain profile.	73	151	IPR017923	-
	Pte5g00823	1002	MobiDBLite	consensus disorder prediction	433	449	-	-
	Pte5g00823	1002	MobiDBLite	consensus disorder prediction	526	540	-	-
	Pte5g00823	1002	MobiDBLite	consensus disorder prediction	959	1002	-	-
	Pte5g00823	1002	MobiDBLite	consensus disorder prediction	181	210	-	-
	Pte5g00823	1002	MobiDBLite	consensus disorder prediction	236	255	-	-
	Pte5g00823	1002	PANTHER	TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED	1	1002	-	-
	Pte5g00823	1002	MobiDBLite	consensus disorder prediction	229	367	-	-
	Pte5g00823	1002	MobiDBLite	consensus disorder prediction	642	676	-	-
	Pte5g00823	1002	MobiDBLite	consensus disorder prediction	270	367	-	-
	Pte5g00823	1002	MobiDBLite	consensus disorder prediction	740	756	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte5g00823	Pte-Chr5	17564319	17569811	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	IWS1	Pte5g00823		Med26	0.00015	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte5g00823	-		-	qsa:O6P43_016284	899.812