Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00817 ATGCAGTCAAAGTCTGGTAGTTCAAACCATCTTAGACCTGACCAGAATTCAATTCCTGCTACCAATGGATATTCTGAACCGTGGTGGCGTAGTATTGGGTACAATCCCATCTCCCCAATCCTGAGCGCTCCAAACGGATCCAACTCATCCTCATTAGAATGCCCAAATGGTGATTCGGAATCAAATGATGGCCAATCTTTGTCCAACAGTGGATTAAATGAAGATGATGATGTCACTAAAGAATCACAGGGCACTGCATCTATTAAGACGGGGAAAGTTGGTCAGGAACACCAAGCAGTGCAAAATGTCTCGACAGCTGCACCTTCAATGCATGATGGTGTTACACAAACTCCACACCTTGAACTTGTGGGACACTCAATTGCATGTGCTTCAAATCCTTATCAGGATCCATTTTATGGGGGATTGATGGCAGCTTATGGTCCCCAGCAGCTGGGATATCCTCCTTTTATTGGGATGCCTCATACCAGAATGGCTTTACCCTTCGACATGGCACAAGAGCCGGTGTATGTGAATGCCAAACAATACCAAGCAATTCTGAGGCGAAGACAGGCACGGGCCAAAGCGGAGCTCGAAAAGAAGCTGATTAAAGTGAGAAAGCCTTACCTTCATGAATCAAGGCATCAGCATGCTATGAGAAGGGCCAGAGGTAATGGAGGTCGTTTTGCAAAGAAAACTAATGGTGAAAATGCAAACAAAAATCCAACAGAAAAAGACAAAGGTTCAGGTACTATCCTATCGTCCCAGTCAGTGAGTTCATCCGGCTCTGAACCCTTGGCCTGTGACTCTGCTGAAAACTGGAACTCTTCTAATGCTCAGCAAGGTAGAAGAGTCTCTCAACTGCATGGAAAATATGATTCAAAGAATTATACAAATGGTAGCAGCAGCACCTACCACAGTGCATTTCAAGCTTCAAATTATCATCTACACCCAGGTGAACGAGTGGAAGAAGGAGACTGTTCAGTGCAGCAAAGGGGAAGTATGTCGTGTGAGCAGTCTTCACATAGACGACTTACTATTCAGTAG 1044 0.4492 MQSKSGSSNHLRPDQNSIPATNGYSEPWWRSIGYNPISPILSAPNGSNSSSLECPNGDSESNDGQSLSNSGLNEDDDVTKESQGTASIKTGKVGQEHQAVQNVSTAAPSMHDGVTQTPHLELVGHSIACASNPYQDPFYGGLMAAYGPQQLGYPPFIGMPHTRMALPFDMAQEPVYVNAKQYQAILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGNGGRFAKKTNGENANKNPTEKDKGSGTILSSQSVSSSGSEPLACDSAENWNSSNAQQGRRVSQLHGKYDSKNYTNGSSSTYHSAFQASNYHLHPGERVEEGDCSVQQRGSMSCEQSSHRRLTIQ* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00817 347 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 173 228 IPR001289 GO:0003700|GO:0006355
Pte5g00817 347 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677|GO:0016602
Pte5g00817 347 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700|GO:0006355
Pte5g00817 347 MobiDBLite consensus disorder prediction 243 285 - -
Pte5g00817 347 MobiDBLite consensus disorder prediction 328 347 - -
Pte5g00817 347 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700|GO:0006355
Pte5g00817 347 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700|GO:0006355
Pte5g00817 347 Gene3D - 171 233 - -
Pte5g00817 347 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 25 283 IPR001289 GO:0003700|GO:0006355
Pte5g00817 347 SMART cbf3 170 231 IPR001289 GO:0003700|GO:0006355
Pte5g00817 347 MobiDBLite consensus disorder prediction 1 24 - -
Pte5g00817 347 MobiDBLite consensus disorder prediction 83 99 - -
Pte5g00817 347 MobiDBLite consensus disorder prediction 321 347 - -
Pte5g00817 347 MobiDBLite consensus disorder prediction 38 73 - -
Pte5g00817 347 MobiDBLite consensus disorder prediction 207 226 - -
Pte5g00817 347 MobiDBLite consensus disorder prediction 207 285 - -
Pte5g00817 347 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00817 Pte-Chr5 16650485 16655610 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00817 1 278 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.930 1.30e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pte5g00817 CBFB_NFYA 1.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00817 K08064 - qsa:O6P43_013957 468.774