Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00776 ATGGTTACATGGCCAGTTTTCATGGCTGAATACTTTCTCCTCCATGGTAAACATGGTTTTGATCTTAACCAGTTGAAGTTGTTCAGAACTGACTACTACAAACAACCTGTTTCTGTAAAGATTGAAATTCTTCATTGTCTGTGTGACAATATGGTGGAAGTTGAAGCAATCAGATCTGAGCTTAACAAAAGGGCTTTGGCGGCTGATCCTGAAATTTTTTCTGATAGGAATGTCTATTTTGGGACTTCCAAGAAAAGGAGGGTTCAGGTTGATGCTAGTGATATTTCTTGTTCGACTGAAAAAATGGTTGATCATAAAATTGACTGGAATAGTGATGAATGCTGCCTCTGCAAGATGGATGGAAATTTGATATGTTGTGATGGTTGTCCTGCTGCTTTTCACTCGAGATGTGTGGGAATTTCCAGCAACCTTCTACCGGAAGGTGATTGGTTTTGCCCTGAGTGTGCAATTAACAGATGTAATCCTTGGCTTAAACTAGAAAAATCTGTTCGAGGAGCTGAGTTGCTTGGAGTTGATCCTCATGGTCGGCTCTATTTTAATAGCTTTGATTATTTATTGGTGTCAGAATCAGCTGATTCCGTTTCTTCTTTCAAATACTACCACAAAAATGACTTAAAAATTGTAATTGAAGCGCTCAAATCTGCAGATGCTTCCTATAACAGCATTTTAACAGCAATATGCAAGCAGTGGAGTCTCCTTGTTCCCTTTAATATACCAACTGAAACACTTTTGATGAAGAATGAGACTAGTGATGGTAGAAAGCTCAAGGATAACTCAATCACTGGTTGCTCTGACTATCTTGGCATTGAGATTGCAAGGCCTGCAAACTGTTCTGATCCTTTGATAGCCTCAGGTAGCCCAATTATCACTTCAGATGGATCCTTTGGAACCGCACATATGAAGTCTGGCATGAGAAGTCTCCAAAACTGCGAGCCCTATAATTGTGATAGATCTGAAGAGTTCTTAAAGGCAGCTACAGTAACAAAAAAGAACCAAGGGGATTTTCTTTTAACATCTACCAGTTCAGATTTGCTGCCAAAAAGTAATTCAATAGTTCCTGACACTGGCTGTGGTTCTACCTTAATTTGTGTCGAAGACGGTACAACACAATTTCCTTGCGAAATTGGTTATGTAAATCATTACACTTTTGCTCGGACAGCCTCACATATTGCAGAAGAGTTAATGCGAAAATCTGCTGAAAAAGCAGAAGAGATTGTAATGGCTGAAGAGGACGTAATTTCTTCCCAAGTTAAGGTTATTTTAAAGAAGTCTGCTAAATTTTGTTGGCCTGATAGTCAAAGTTGTAGTCTAGAAACCACAAAAGAAAACTGTGGCTGGTGCTATTCCTGTAAACTGTTGACTGATGACAGAGATTGCTTGTTTCGCACTGTGATGGGGCCTGTTCATGAAGTGCCTAAATGTGATCAACATGTGCTTCATGCTAAAAGGAGTAAGGACGGTCATCTTATAGATCTCATTTCCTACATTATCTCACTTCAGGATCGATTATGTGGTCTCTTATTGGGTCCATGGTTGAATCCTCACCATGTTACACTCTGGCATGCCTGCCTTCTTGAGGCATCAGATATTGGACCTCTCAAATTGTTGTTGCTCACGCTAGAGTCCAATTTGCGGCATCTTGCACTATCGGCAGATTGGTTTAAGCATGTAGATATGGCTGTTACTATGGGTTCAGCTTCCCACATTGTTGTTAAAACACAGCGTTCTTCACTGAAACATGGGATTGGGAGGAAACGAGCCAGGTTTTTGGATGCTGAGTCGAACTCTTCCCATTCTACTAATGGATTGAGTATGTATTGGTGGAGGGGTGATCAGCTCTCTCGACAATTATTTAATTGGAAGGTTTTGCCTCGGTCCTTGGCTACTAAGGCTGCCAGACAAGCTGGATGTAAGAAAATACCTGGCATATTGTACCCTGATAATTCAGAATATGTGAGGAGAAGCAAATATTGTGCTTGGCGAGCTGCTGTGGAGGCAGCATCTAGTATTGAACAGCTTGCTTTGCAGGTTAGGGAGCTTGACAAAAACATCAGGTGGGATGATATCGAAAATACACATCCTCTCTGTACTTTGGACAAAGACTCGAGAAAATCAGCCAGGTTATTCAAAAAAGTTATCATCCGCAGAAAGCGTACTGAAGGGGATGTTGTTAAATATCTTCTTGATTTTGGCAAGAGAAGGGCTATTCCTGACATTGTAACAAAACATGGGTCTCCATTACAAGACTCTTCTGGTGAGAGGAAGAAATATTGGCTTGATGAATCTTTTGTTCCTTTGCATCTTTTAAGAAATTTTGAGGAAAAGAGAATTGCTCGCAAGACCAGTGATATAAAGCCTAGAAAAGATTGTGTGGTTGGTGTAATAAACAAGAGGAATCGCCAGGAGAGGGGACTTTCATATTTATTTAGAAAAGCAGAAAGATCTGAGTACCTCAAATGTGGACATTGCAATAAAGATGTTATGATCAGGGAAGCTGTCATTTGCCTCTACTGCAATGGATCTTTCCACAAAAGGCATGCCAAAAAATCTCCTGGGGCTGTGGCTGCTGACTGCACATACTCATGCTATAAATGCCAAAATGGAATGTACTCAAGGACTGACAAGAGAAGTGAAAATAGTTCTTTAAAAAGGCGGAAATCACAGTTGCGTAAACATAAGACAAATCCTGCAGTTGGCAGCTCAGTGGTAGGAAGAGGTAGAAAAAAAGCGTGGACCAATGGACAGCAAATGCGATCTCTAAGGAATAAAAAGATAATGCCAATTGTACCGCTACGTCGTTCAGCTAGAAAGACCAGATGTTTGTCACTGCAGCATGTAAAGGTTGGAGGCAGTAGGGCAGGGAAGAAGACCAAATCCCAAGTCAATTATGCAAAAGCCAATCAGAAGAAATCCAAATTGTCTTGTAGAAAAGGAAAGCAGAACAAGTCTAGGGCATCATTTAAGAAATCTGTAAATTCTGTTTCTCAATGTAAGAAGAGGAAACAGTTTTATAACAGTTACTGGCTGAATGGCCTGCTGCTTTCCAGAAAGTCAAATGATGAACGAGTAAAGCTTTTTACAGAGAAAAATGCCTCTGGACAGTTGATAGTCTCCCGGGATAAAATTAAATGCTGTCTTTGCGACGAAGCAAGACATGATTCTTCCCTTGAGTACATAGCTTGTGAGTTATGTGGAGTGTGGTTTCATAGAGATGCTTTTGGACTCAGCTTAGAGACGGTCAATCAACTTATTGGATTCAGGTGTCATCTTTGTCTTGAGAGGGATCCTCCTGTCTGCCCAAACATGAAGATTAATGTGTTTCAATCTTCTGAGACTCTCAGAAGTCCTGCTATGGAATGTGCAGAGGAAGTATCAGCATGTGCTGCAGAAGAAGTATCTGCTACCATCAAACCTTCAGACGAGGTATACCCAGAATAG 3459 0.4071 MVTWPVFMAEYFLLHGKHGFDLNQLKLFRTDYYKQPVSVKIEILHCLCDNMVEVEAIRSELNKRALAADPEIFSDRNVYFGTSKKRRVQVDASDISCSTEKMVDHKIDWNSDECCLCKMDGNLICCDGCPAAFHSRCVGISSNLLPEGDWFCPECAINRCNPWLKLEKSVRGAELLGVDPHGRLYFNSFDYLLVSESADSVSSFKYYHKNDLKIVIEALKSADASYNSILTAICKQWSLLVPFNIPTETLLMKNETSDGRKLKDNSITGCSDYLGIEIARPANCSDPLIASGSPIITSDGSFGTAHMKSGMRSLQNCEPYNCDRSEEFLKAATVTKKNQGDFLLTSTSSDLLPKSNSIVPDTGCGSTLICVEDGTTQFPCEIGYVNHYTFARTASHIAEELMRKSAEKAEEIVMAEEDVISSQVKVILKKSAKFCWPDSQSCSLETTKENCGWCYSCKLLTDDRDCLFRTVMGPVHEVPKCDQHVLHAKRSKDGHLIDLISYIISLQDRLCGLLLGPWLNPHHVTLWHACLLEASDIGPLKLLLLTLESNLRHLALSADWFKHVDMAVTMGSASHIVVKTQRSSLKHGIGRKRARFLDAESNSSHSTNGLSMYWWRGDQLSRQLFNWKVLPRSLATKAARQAGCKKIPGILYPDNSEYVRRSKYCAWRAAVEAASSIEQLALQVRELDKNIRWDDIENTHPLCTLDKDSRKSARLFKKVIIRRKRTEGDVVKYLLDFGKRRAIPDIVTKHGSPLQDSSGERKKYWLDESFVPLHLLRNFEEKRIARKTSDIKPRKDCVVGVINKRNRQERGLSYLFRKAERSEYLKCGHCNKDVMIREAVICLYCNGSFHKRHAKKSPGAVAADCTYSCYKCQNGMYSRTDKRSENSSLKRRKSQLRKHKTNPAVGSSVVGRGRKKAWTNGQQMRSLRNKKIMPIVPLRRSARKTRCLSLQHVKVGGSRAGKKTKSQVNYAKANQKKSKLSCRKGKQNKSRASFKKSVNSVSQCKKRKQFYNSYWLNGLLLSRKSNDERVKLFTEKNASGQLIVSRDKIKCCLCDEARHDSSLEYIACELCGVWFHRDAFGLSLETVNQLIGFRCHLCLERDPPVCPNMKINVFQSSETLRSPAMECAEEVSACAAEEVSATIKPSDEVYPE* 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00776 1152 SUPERFAMILY FYVE/PHD zinc finger 97 157 IPR011011 -
Pte5g00776 1152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1044 1105 IPR013083 -
Pte5g00776 1152 MobiDBLite consensus disorder prediction 962 976 - -
Pte5g00776 1152 ProSitePatterns Zinc finger PHD-type signature. 114 155 IPR019786 -
Pte5g00776 1152 PANTHER PHD FINGER FAMILY PROTEIN 2 1104 - -
Pte5g00776 1152 CDD PHD_SF 1051 1098 - -
Pte5g00776 1152 ProSiteProfiles Zinc finger PHD-type profile. 111 158 IPR019787 -
Pte5g00776 1152 MobiDBLite consensus disorder prediction 879 921 - -
Pte5g00776 1152 Coils Coil 398 418 - -
Pte5g00776 1152 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 30 62 IPR028942 -
Pte5g00776 1152 Pfam PHD-finger 114 156 IPR019787 -
Pte5g00776 1152 SMART PHD_3 1050 1099 IPR001965 -
Pte5g00776 1152 SMART PHD_3 113 156 IPR001965 -
Pte5g00776 1152 SUPERFAMILY FYVE/PHD zinc finger 1047 1104 IPR011011 -
Pte5g00776 1152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 174 IPR013083 -
Pte5g00776 1152 MobiDBLite consensus disorder prediction 956 978 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00776 Pte-Chr5 14208422 14217485 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00776 1 1110 PHD Transcription Factor Family AT5G12400 40.505 0.0 817
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte5g00776 PHD 1.7e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00776 - - cave:132164561 1249.19