Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00727 ATGTACCACCATCACCAACATCAAGTGAATAATCTCCATTCTTCCTCAAGGGCGGCTATCCCTTCTGAGAGGCATGTCTTCATGCAAGGTGGGATTGGCCCTGGAGATTCAGGACTGGTTCTCTCAACGGATGCAAAGCCTAGACTCAAATGGACACCAGATCTCCATGCCAGATTCATAGAAGCAGTTAATCAATTAGGTGGAGCAGACAAGGCAACACCAAAAACAGTTATGAAACTCATGGGGATTCCAGGGCTTACTCTCTATCACTTAAAGAGCCATCTGCAGAAGTACAGACTGAGCAAGAACTTGCATGGACAAAATCATAACGTGGCCAACAAGATTGCGACAGGAGAAAGGCTTTCTGAAATCAATGGAACTCATATGAACAATTTAAGTCTTGGACCTCAAACACCCAAAGATTTGCCTATCGGTGAAGCACTGAAGATGCAGATTGAAGTGCAAAGAAGGCTACATGAACAGCTCGAGGTCCAAAGACACTTGCAACTCCGAATAGAAGCTCAAGGGAAATACCTTCAATCAGTGTTGGAGAAAGCACAAGATACACTTGGAAGACAGAACTCAGGCACATTAGGACTTGAAGCTGCAAAGGTCCAACTTTCTGAACTCGTGTCAAAAGTCTCATCTCAATGCCTGAATTCTACGTATATAGATCTCAAGGAATTACAAGCATTTTGTCCCCAGCCAACAGATTGTTCCATGGACAGTTGCCTCACAACCTGTGAAGGATCTCAGAGGGACCACGATTTACAAAATAGTGCCATAACATTGAGACCACCCTATTGGTGTAGTGATGATCTGAAAGGGAACCGATGTCTTCCTAACCTGGGAAAAGATGCTGCAGAGAGATCAGGCTTTCAAGTAGAAAGAAGCTGCAGCAATTTGACAATGAGTATTGGACTTGAACGAGAATCAAAAAGCTGTGGCACCCAGAATCTGAAGAGATTATTAAACATGGGAAGGGACAGTGATGGCGATTTTCAAAGCAGAAACAACAAGAGAATGATAGAATCAATTGATTTAGAAGATGACAAAGTTGGTCGAGAACACAAGTTGCCTTGCTTTGCAGCTAGACTGGACCTTAATTCCCGTGGAGAAAATGATGGTAATACAAATTTCAAGCAACTTGACTTAAATGGTTTCAGTTTGAACTAA 1176 0.4277 MYHHHQHQVNNLHSSSRAAIPSERHVFMQGGIGPGDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQNHNVANKIATGERLSEINGTHMNNLSLGPQTPKDLPIGEALKMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQDTLGRQNSGTLGLEAAKVQLSELVSKVSSQCLNSTYIDLKELQAFCPQPTDCSMDSCLTTCEGSQRDHDLQNSAITLRPPYWCSDDLKGNRCLPNLGKDAAERSGFQVERSCSNLTMSIGLERESKSCGTQNLKRLLNMGRDSDGDFQSRNNKRMIESIDLEDDKVGREHKLPCFAARLDLNSRGENDGNTNFKQLDLNGFSLN* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00727 391 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Pte5g00727 391 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 6 304 IPR044848 GO:0003700
Pte5g00727 391 Pfam MYB-CC type transfactor, LHEQLE motif 143 188 IPR025756 -
Pte5g00727 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Pte5g00727 391 Gene3D - 45 103 - -
Pte5g00727 391 FunFam Myb family transcription factor 45 103 - -
Pte5g00727 391 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
Pte5g00727 391 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00727 Pte-Chr5 11232958 11235818 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00727 78 392 G2-like Transcription Factor Family AT3G04030 48.276 2.18e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pte5g00727 Myb_DNA-binding 3.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00727 - - cave:132161652 494.582