Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00656 ATGGCTGCACGAGGAGGAAGAGAAAGAGAACGAGACCGTGATCGTGACCGTGATCGAATTCGGAAGGATTTTCCTTCGAGGTTTGATGATAAGAGCGCTGGTAATTCTGGACATACTGGTAGCAAAGCTCCCCCTTCTAGACACTTATGGGTTGGGAACCTAGCACACCATATAATAGAGAAGGAACTCACTCACCATTTTGTACAATTTGGACCCCTTGAAAGTGTGGCATTCCAACCTGGTCGTAGCTATGCTTTCATCAATTTTGTGAGGGATGATGATGCCATTGATGCCATGAAAGAGCTTCAAGGTTTTCCTGTTGCAGGCAATCCACTTAGAATTGAGTTTGCAAAGGCGGATAAGCCTTCATCAATATCACGTAAAGATGATTACTCCCAAAGCAGGGATGAGCGAAGTCGGTCAATAAGAGGATCTCCACTTCCACATAGAGATTTTAGAGGGTACCATGAGAGCCCAGAACCGCCATTTTATGATAAATCCAAGATAAGTGGGAAAGATCCAGAGCCTAGTGAAGTTCTATGGATAGGTTTTCCTACTTCCCTAAAGGTCGATGAGATATCCTTGAGAAAGGCATTTTCTCAATTTGGCGAGATCGAGAAGATTACTACTTTTCCAGGTCGTAGTTATGCGTTTGTTCGGTTCAGGAATTTGATGTCAGCGTTCAGGGCAAAAGAAAGTCTGCATGGGAAGTTGTTTGGGAATCCACGTGTAAATATATGCTTTGCCAAGAGTGAATCTGGTTCACATAGTAGTGGAAGGAGCTCGGACATTGATCATCATGCCTCCTTAGAGAACACCAGGCATGAGAGAAATTTCAGACCTTTAATGGAACCTGGTTCTCCTCAGCTGTTGCCTCCTTGGACTAGCGATGATGCTGATGTGTATAACTTTAACAGGAAGGAACATCTGTCGAGTGGTGGGGTAAATTCACATGAACAAGTTAGGTTTGGAGAAAAGGGATCTGATGTACGTCTGCGGCAAGATTTATATGAATTTCGCGGTACCCCTACAAGAGAAAGACATGCTCTTCCACATGATATTTCCCCAAGATTTCCAAAAAAAGGTCCTATGTTTGAGGATCCATGGGACTTACCTGAAGAGATTCAGTACTTTCATGAGGCTAAGAAACTGAAGACAGAGTATCTTCCTGATAAGGAACTTCCAGAATATCCTTTCTCTGAGTTAGAGCGCCAGAAACATGTTTTCTCAAGGGCATCAACTGACATTTCCCTACATGATAAAGCCTTCAAGGATGGTCGTTTTTCACTTGAACAGATGCCTGAACGAATGTCAAATTTTGCTCATACTGTTGCAGAAAGAAGTGACCACTGGAAACAATCTTATGACAGTGTCCAGCTTGATTCTGGACCTTCCGGTTCTTTGCAATCAAATTCTATTGCCGAAAGGAGAAGATTTACCCCAGAACCTGATAAACCTTCCTTGACTGAGTGGAAATGGGTTGGAACCATAGCTAAAGGGGGGACTCCCGTATGCCGTGCTCGATGTTTTCCTGTTGGGAAAATTTTGGACATCTTCTTGCCTGAATTCATTGATTGCACTGCAAGGACTAGTTTAGACATGCTTTCTAAGCATTATTATCAAGCAAGTGGAGCTTGGGTTGTTTTTTTCGTGCCTGAAAGTGATGCTGACATTAGCTTCTACAATGAATTCTTGCATTACTTGGAAGAGAAGCAACGGGCTGCAGTTGCTAAATTGGATGATAAGAATACTTTGTTTCTGGTACCGCCATCCGATTTCTCGCAGAAGGTACTCAAAGTACCGGGAAAACTGAGCATCTCTGGTGTTGTCCTGAGGTTGGAGCAGTATGCTGTTTCAGGTGGTGCTCCTATTCCCAATCAAAATGATCCCAGAGATATAAACTTGGGTTTTGATGGGGTTGCTTTGCACAAGTCGTCTATTCCTCCGGTCTATAATCTCCCATCAACATCATCTCTGCCTTTCTCGAGAGGTATGATTACTTCTCCAACTGCACTACCTCATGATGGTGTCGGCAGACAATTTGAACCTAATGACGATAGAAGACATAAATATCCCATCAATCAGAGAAACCTCATTTCCGGATCAAACTGGTCATCACAGCATCTGCAGCAATCTGGAACATTACCCCATGATACTAATCCTGTTGTTGAGGAACAGCAGCAATTTACGCGGAGACCGGTCCAAGATTTAAGTCATAGTCAATATACCCCAGGACCATCAAGTACACAATCTGTTGGGGGCTTGCACCAGGAGCAGCTGGCTCAAATGGCGTCATCTCTATTTGAACTGCAGAGGCAAGCAGGAAGCCAAGCTAATGGTTCAAAGACTCAATTTAGACATCCACAGACTAGTGTTGGTCAGCAGAATACTTCTGAAGTTTTGACATCCCAGTTTCCTCAAGTTCTTCAGAGGGCACAGCAGCAGAGTGGAAATTTGGCTCAATTGCCTCAAATGGTTGATGGAAACGAGCAGTTACTGAATAGTGCACAAGAATCAGAAGGGGATCCACAAAAACGTCTCCAAGCAACATTGCAACTTGCAGCAGCCCTTCTTCAGCAAATTCAACATGGAAAGTAA 2598 0.4365 MAARGGRERERDRDRDRDRIRKDFPSRFDDKSAGNSGHTGSKAPPSRHLWVGNLAHHIIEKELTHHFVQFGPLESVAFQPGRSYAFINFVRDDDAIDAMKELQGFPVAGNPLRIEFAKADKPSSISRKDDYSQSRDERSRSIRGSPLPHRDFRGYHESPEPPFYDKSKISGKDPEPSEVLWIGFPTSLKVDEISLRKAFSQFGEIEKITTFPGRSYAFVRFRNLMSAFRAKESLHGKLFGNPRVNICFAKSESGSHSSGRSSDIDHHASLENTRHERNFRPLMEPGSPQLLPPWTSDDADVYNFNRKEHLSSGGVNSHEQVRFGEKGSDVRLRQDLYEFRGTPTRERHALPHDISPRFPKKGPMFEDPWDLPEEIQYFHEAKKLKTEYLPDKELPEYPFSELERQKHVFSRASTDISLHDKAFKDGRFSLEQMPERMSNFAHTVAERSDHWKQSYDSVQLDSGPSGSLQSNSIAERRRFTPEPDKPSLTEWKWVGTIAKGGTPVCRARCFPVGKILDIFLPEFIDCTARTSLDMLSKHYYQASGAWVVFFVPESDADISFYNEFLHYLEEKQRAAVAKLDDKNTLFLVPPSDFSQKVLKVPGKLSISGVVLRLEQYAVSGGAPIPNQNDPRDINLGFDGVALHKSSIPPVYNLPSTSSLPFSRGMITSPTALPHDGVGRQFEPNDDRRHKYPINQRNLISGSNWSSQHLQQSGTLPHDTNPVVEEQQQFTRRPVQDLSHSQYTPGPSSTQSVGGLHQEQLAQMASSLFELQRQAGSQANGSKTQFRHPQTSVGQQNTSEVLTSQFPQVLQRAQQQSGNLAQLPQMVDGNEQLLNSAQESEGDPQKRLQATLQLAAALLQQIQHGK* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00656 865 Gene3D - 165 273 IPR012677 -
Pte5g00656 865 MobiDBLite consensus disorder prediction 455 476 - -
Pte5g00656 865 CDD RRM_SF 49 115 - -
Pte5g00656 865 MobiDBLite consensus disorder prediction 1 47 - -
Pte5g00656 865 Pfam SPOC domain 487 601 IPR012921 -
Pte5g00656 865 SMART rrm1_1 48 115 IPR000504 GO:0003723
Pte5g00656 865 SMART rrm1_1 179 247 IPR000504 GO:0003723
Pte5g00656 865 MobiDBLite consensus disorder prediction 1 29 - -
Pte5g00656 865 MobiDBLite consensus disorder prediction 695 754 - -
Pte5g00656 865 CDD RRM_SF 187 246 - -
Pte5g00656 865 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 119 IPR000504 GO:0003723
Pte5g00656 865 MobiDBLite consensus disorder prediction 119 171 - -
Pte5g00656 865 FunFam RNA recognition motif (RRM)-containing protein 164 257 - -
Pte5g00656 865 MobiDBLite consensus disorder prediction 772 797 - -
Pte5g00656 865 PANTHER RNA RECOGNITION MOTIF-CONTAINING 45 861 - -
Pte5g00656 865 MobiDBLite consensus disorder prediction 120 171 - -
Pte5g00656 865 MobiDBLite consensus disorder prediction 679 693 - -
Pte5g00656 865 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 251 IPR000504 GO:0003723
Pte5g00656 865 SUPERFAMILY RNA-binding domain, RBD 36 125 IPR035979 GO:0003676
Pte5g00656 865 MobiDBLite consensus disorder prediction 455 484 - -
Pte5g00656 865 SUPERFAMILY RNA-binding domain, RBD 123 249 IPR035979 GO:0003676
Pte5g00656 865 CDD SPOC_FPA-like 492 611 - -
Pte5g00656 865 MobiDBLite consensus disorder prediction 664 754 - -
Pte5g00656 865 Gene3D - 2 129 IPR012677 -
Pte5g00656 865 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 241 IPR000504 GO:0003723
Pte5g00656 865 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00656 Pte-Chr5 8726880 8735790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00656 27 250 Eukaryotic Initiation Factors Gene Family AT1G71770 22.881 3.24e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00656 - - qsa:O6P43_014423 892.108