Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00653 ATGGGTTCCAAGAAGGGCAGTGACCCTCACTTCGGAGACGGTGCCAGCCCTGGGAAAATTTTTGTCGGAGGTTTAGCCCAAGATACCACTTTGGAAACCTTTGTGACATACTTTGAGAAGTATGGGGAGATAACCGATAAGGTTATTATGAAGGATCGACATACGGGTCGACCTAGAGGGTTCGGTTTCATTACTTATGCGGAACCTGCCGTGGTTGATAAGGTCATCCTAGAAGACCATATCATTAATGGGAAGCAGGTTGAGATCAAAAGGACCATTCCAAAAGGTTCTGGACAAAGTAATGACTTCAAGACAAAGAAAATCTTTGTGGGTGGTATACCGACCAATATGACTGAAGAGGAGTTAAAGGGCTTTTTCTCAGAATATGGGAAGGTGATTGAACACGAGATTATCCGTGATCATGCTACTAAACGGTCTAGGGGTTTTGGGTTTGTTGTGTTCGATAGTGAAAAAGTTGTTGATAATTTGCTGGAGAATGGTAATATGATTGACATGGCTGGTACACGGGTTGAGATCAAGAAGGCTGAACCAAAAAAAGCCTCAAACCCAGCACCTCTTCCTCCATATGGTAGTATGTCTAGGGCACGCCCATATAATGATGGGTTTGGTGGATATGGTGACTCCTATAGCAATTTTGGGCCTTTTGGAAGTGGCGTTAATCCTGCTTTCTATAGATCACTTGGAGGTTATGGTGGTAAGTTTGGTGATTATGGTGGCGGTGAGGAATTTAGTAGTAGTTTTGGAGGTTTTTGTAGTGGTGGTTATGGTGGATATCGTGGAGCTTCATCGTTTGGCTACTCTAGTCGCAATGGCTCCTATATGGGTGGCCTTGGAGGTGGATATGGTGGCAGCGGGTTAGGAGCATATGGACGTGGAGTTGGGGCCTATGGAAGGTACGGTGGTTCAGGCCCCAGTACTGGTTATGAATCAGGCATTGGTGGTGCATATGGTAGAGCTGAAGGGTTGTATGGAAGTAGGTCAGGCTATGGTGGCAATAGCCGTTACCATCCTTATGCAAGATAG 1044 0.455 MGSKKGSDPHFGDGASPGKIFVGGLAQDTTLETFVTYFEKYGEITDKVIMKDRHTGRPRGFGFITYAEPAVVDKVILEDHIINGKQVEIKRTIPKGSGQSNDFKTKKIFVGGIPTNMTEEELKGFFSEYGKVIEHEIIRDHATKRSRGFGFVVFDSEKVVDNLLENGNMIDMAGTRVEIKKAEPKKASNPAPLPPYGSMSRARPYNDGFGGYGDSYSNFGPFGSGVNPAFYRSLGGYGGKFGDYGGGEEFSSSFGGFCSGGYGGYRGASSFGYSSRNGSYMGGLGGGYGGSGLGAYGRGVGAYGRYGGSGPSTGYESGIGGAYGRAEGLYGSRSGYGGNSRYHPYAR* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00653 347 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Pte5g00653 347 SMART rrm1_1 107 180 IPR000504 GO:0003723
Pte5g00653 347 SMART rrm1_1 19 90 IPR000504 GO:0003723
Pte5g00653 347 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 98 - -
Pte5g00653 347 SUPERFAMILY RNA-binding domain, RBD 16 99 IPR035979 GO:0003676
Pte5g00653 347 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 5 347 - -
Pte5g00653 347 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 77 IPR000504 GO:0003723
Pte5g00653 347 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 170 IPR000504 GO:0003723
Pte5g00653 347 Gene3D - 18 96 IPR012677 -
Pte5g00653 347 SUPERFAMILY RNA-binding domain, RBD 102 213 IPR035979 GO:0003676
Pte5g00653 347 Gene3D - 97 218 IPR012677 -
Pte5g00653 347 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Pte5g00653 347 FunFam Heterogeneous nuclear ribonucleoprotein 1 99 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00653 Pte-Chr5 8630996 8634771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00653 18 171 Eukaryotic Initiation Factors Gene Family AT2G23350 28.395 6.94e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00653 K12741 - gmx:100801373 437.958