Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00624 ATGGCGATGACAAGCGTAGTTCCGGCTAACCGTCGTCGAGCGGCGGGCCCTTCGGAAGAGGCCATCGAGTTCGAAACAACAGAGGGTATTCAACCAATTCTGAGCTTCGATCATATGGGAATCAAAGAAAATTTACTTCGCGGTATCTATGGATATGGATTTGAAAAACCTTCTGCTATCCAACAACGTGCTGTGAAGCCTATTATTGAAGGCCGTGATGTTATCGCACAAGCTCAATCTGGTACCGGCAAGACCTCTATGATTGCCCTCGTTGTCTGCCAAATGATCGAACCTACTATCAAGGAAGTTCAAGTGTTAATTTTATCGCCGACAAGAGAATTGGCATCTCAGACGGAGCAAGTTATACGGACAATAGGAGAGTATATGAATATACTAGCACACGCTTGCATTGGAGGCAAAAGCATCGGTGAAGATATTAGGAAACTCGAACATGGGGTTCATGTTGTTTCTGGAACGCCTGGTAGAGTGTGTGACATGATTAAGAGGAGAGCGTTGCGCACTAGAGCTATCAAGTTGCTAATCCTTGATGAATCTGATGAGATGTTGAGTCGAGGGTTCAAGGATCAGATATATGATGTCTACCGATATCTCCCACCGGAACTTCAGGTTGTCTTGGTATCTGCTACCCTGCCTCATGAAATATTGGAGATGACAAATAAGTTCATGACAGATCCTGTGCGCATTCTTGTAAAACGTGATGAGTTGACTTTGGAGGGTATTAAGCAGTTTTTTGTTGCCGTTGAGAGGGAAGAGTGGAAGTTTGATACCTTGTGTGATCTTTATGATACACTTACAATTACTCAGGCCGTTATATTCTGTAACACAAAGCGAAAGGTGGATTGGCTCACTGAAAGAATGCGTTCAAATAATTTCACTGTTTCATCTATGCATGGAGACATGCCTCAAAAGGAGAGAGATGCAATCATGTCTGAATTTCGAAGTGGTGAAACACGAGTCTTGATCACAACTGATGTTTGGGCTCGGGGACTTGATGTTCAACAGGTCTCTCTAGTTATCAATTATGACCTTCCAAATAATCGAGAGCTTTACATCCATCGAATTGGCCGTTCTGGTCGGTTTGGACGCAAGGGTGTTGCTATTAACTTCGTCAAGAATGATGATATCAAAATCCTGAGGGACATAGAGCAATACTACAGTACCCAGATTGATGAGATGCCAATGAATGTTGCTGACCTTATTTAA 1224 0.4314 MAMTSVVPANRRRAAGPSEEAIEFETTEGIQPILSFDHMGIKENLLRGIYGYGFEKPSAIQQRAVKPIIEGRDVIAQAQSGTGKTSMIALVVCQMIEPTIKEVQVLILSPTRELASQTEQVIRTIGEYMNILAHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRALRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPELQVVLVSATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTVSSMHGDMPQKERDAIMSEFRSGETRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00624 407 Gene3D - 243 407 IPR027417 -
Pte5g00624 407 CDD DEADc_EIF4AIII_DDX48 36 236 - -
Pte5g00624 407 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 31 390 - -
Pte5g00624 407 CDD SF2_C_DEAD 247 377 - -
Pte5g00624 407 FunFam Eukaryotic initiation factor 4A-III 241 407 - -
Pte5g00624 407 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 407 IPR001650 -
Pte5g00624 407 SMART ultradead3 53 250 IPR014001 -
Pte5g00624 407 FunFam ATP-dependent RNA helicase DBP5 13 240 - -
Pte5g00624 407 Pfam Helicase conserved C-terminal domain 260 368 IPR001650 -
Pte5g00624 407 Pfam DEAD/DEAH box helicase 59 221 IPR011545 GO:0003676|GO:0005524
Pte5g00624 407 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 65 235 IPR014001 -
Pte5g00624 407 SMART helicmild6 287 368 IPR001650 -
Pte5g00624 407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 390 IPR027417 -
Pte5g00624 407 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 34 62 IPR014014 GO:0003724
Pte5g00624 407 Gene3D - 24 242 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00624 Pte-Chr5 7349710 7353953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00624 19 408 Eukaryotic Initiation Factors Gene Family AT3G19760 86.410 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00624 K13025 - csv:101222664 727.243