Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00607 ATGCAATCTGATAATGGCAAGTTGTTTATTGGCGGGATATCTTGGGACACAAATGAAGATCGCTTGAAGGAGTATTTCAGTTCATATGGGGAGGTTGTTGAAGCTGTGATTATGAAGGATCGTACCACAGGTCGAGCCCGAGGCTTTGGATTTATTGTCTTTGCAGACCCTACAGTTGCAGATATAGTTGTAAAAGAGAAGCACAACATTGATGGAAGGATGGTTGAGGCAAAGAAGGCTGTGCCTAGGGATGACCAAAATGTATTAAGTAGAAACAGTGGTAGTACCATTCAAGGTTCTCCTGGTGGAGGTCGCACAAGAAAGATATTTGTTGGAGGTTTAGCATCTACTGTTACAGAGAATGATTTCAAAACATATTTTGATCAGTTTGGGACAATTACAGATGTTGTCGTGATGTATGATCATAGCACACAGAGACCTAGAGGTTTTGGGTTTATCACTTATGACTCTGAAGAAGCAGTGGACAAGGTTCTACATAAGACTTTCCATGAACTGAATGGGAAAATGGTTGAGGTCAAGAGAGCAGTTCCTAAAGAGTTATCGCCAGGAGCAAGTCGCAGTCCACTTGGTGGATATAACTATGGACTGAGTAGGGTTAACAGCTTCTTAAGGGGATATACACAGGGTTATACTCCAACTAATATTGGAGGTTATGGACTTGGGATGGATGGTAGATTTAGTCCAGTTGCTAGTAATCGAAGTGGATTTCCTCCAGTTGGTTCTGGTTATGGAATGAGCTTGAACTTTGAACCTGGTTTTGGAGGGAGTACTAGTTATAACAGTAACCTTAGCTACGGACGAGGATTGAGTCCTTACTTCATTAGCAATTCAAACAGGTTTGGAACTCCTATAGTTTGTGATAGTAATAATGGAGGGAGCAACTCCTTTTTCAGCTCTGTGACTCGAAATTTGTGGGGTAATGGAGATCTTAGTTATGGCACAGGCTCTGCAAGACCCAACTCATACATGGGATCAGGGAGCAGAAATGCCTTTGGTGATACTGGAGTCAATTGGGGTTCTTCTGCAAATGCTGTTCATGGTGGAGGAAACAGTGCTTTTCACAGTTCTGGGAATCTTGGCTATGGAGGTGGAGACAACAATTACGCTGTGGGACGAGAAGCATATGGAAGAAGCAGTATGACCAGTATTGGTCCAACATCATCATACTCTTTATCAAATGGAGGTTTTGATGGAGCCCTTTCTGATTTCTATAGTTCTGGTTCCATCTATAATGATCCAACTTGGAGATCATCAAATTCTGAGCAAGAAGAATCTGGCCGCTTCGACTATGGGTTTGGAAGTGCTGCGGCAGATATTTCTGCGAAGAGTTCTCCTGGATATGTTGGCGGTTATAGTGTTAATAAGAGACAGTCAAATAGGGGGATTGCTACATAG 1416 0.4244 MQSDNGKLFIGGISWDTNEDRLKEYFSSYGEVVEAVIMKDRTTGRARGFGFIVFADPTVADIVVKEKHNIDGRMVEAKKAVPRDDQNVLSRNSGSTIQGSPGGGRTRKIFVGGLASTVTENDFKTYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEAVDKVLHKTFHELNGKMVEVKRAVPKELSPGASRSPLGGYNYGLSRVNSFLRGYTQGYTPTNIGGYGLGMDGRFSPVASNRSGFPPVGSGYGMSLNFEPGFGGSTSYNSNLSYGRGLSPYFISNSNRFGTPIVCDSNNGGSNSFFSSVTRNLWGNGDLSYGTGSARPNSYMGSGSRNAFGDTGVNWGSSANAVHGGGNSAFHSSGNLGYGGGDNNYAVGREAYGRSSMTSIGPTSSYSLSNGGFDGALSDFYSSGSIYNDPTWRSSNSEQEESGRFDYGFGSAAADISAKSSPGYVGGYSVNKRQSNRGIAT* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00607 471 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Pte5g00607 471 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 467 - -
Pte5g00607 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Pte5g00607 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 167 IPR000504 GO:0003723
Pte5g00607 471 SUPERFAMILY RNA-binding domain, RBD 3 105 IPR035979 GO:0003676
Pte5g00607 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 184 IPR000504 GO:0003723
Pte5g00607 471 SMART rrm1_1 108 180 IPR000504 GO:0003723
Pte5g00607 471 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pte5g00607 471 CDD RRM2_Hrp1p 108 185 - -
Pte5g00607 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pte5g00607 471 MobiDBLite consensus disorder prediction 82 103 - -
Pte5g00607 471 MobiDBLite consensus disorder prediction 86 102 - -
Pte5g00607 471 Gene3D - 103 192 IPR012677 -
Pte5g00607 471 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Pte5g00607 471 Gene3D - 4 88 IPR012677 -
Pte5g00607 471 FunFam Heterogeneous nuclear ribonucleoprotein 1 104 191 - -
Pte5g00607 471 SUPERFAMILY RNA-binding domain, RBD 105 204 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00607 Pte-Chr5 6912946 6916947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00607 6 181 Eukaryotic Initiation Factors Gene Family AT2G23350 25.000 6.01e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00607 K14411 - gmx:100795907 754.592